Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq666 185 1e-41 seq141 140 4e-28 seq99 105 8e-18 seq1918 87.8 2e-12 >seq666 Length=16246 Score = 185 bits (204), Expect = 1e-41 Identities = 722/1115 (65%), Gaps = 35/1115 (3%) Strand=Plus/Plus Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110 |||| || |||||||||||||| | ||| | || | ||| ||||| || ||||| |||| Sbjct 14396 CATCAGCCAGACCTTGAACACCAATACCCACGGGACGGTGGCGCATGTTCGACTTGCGCG 14455 Query 111111 CAGTCT-CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 111169 | ||| | || || || | || ||| || || ||| || || || || | | Sbjct 14456 CC-TCTACGACCGGGTAGTAGTTGACGTCGATCACCTTGTTCAGGTTGCGCGTCACCACC 14514 Query 111170 TTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTT 111229 || || | ||||| | ||| || | || | ||| || || || || | Sbjct 14515 TTGGTTACTTCATACAACCTTTTGTAGTTGAACACACC-GTC-CTCCA----CAAACATC 14568 Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || || | || ||||||||||| |||||| |||||| | |||||||| | Sbjct 14569 GGCAGTGCCACCGACGCCAAATTGCACACAGCCACCTCATCAGGAGAAGTGTACTCCATC 14628 Query 111290 ATTTCTGTACATAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTC 111346 | ||| || |||||| || | ||||| ||||| || | ||||| ||| Sbjct 14629 ACTTCACAGCACAAGTTGCTGGAGCGG---ATCGTGCCCAAGTTTTGCTGGTTCGACTTG 14685 Query 111347 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGA 111406 ||| || |||||||| |||||| | || |||||||| |||| | | || Sbjct 14686 CGGTTAGCTGCGTCCTTGTACAGCATGAATGGAACACCCGTCTCAATCTGCGCGTCAAGG 14745 Query 111407 ATAGCCTTCCAAACATCGGCGGCTGGTACAATGG-CGT--TG---GCCCGTCCCTCCGCC 111460 || || |||| | | |||| | || || ||| || || ||||||||| | Sbjct 14746 ATGGC-----AAACCACAGTTGCTG-TGCATTGATCGTCTTGCGAGCACGTCCCTCCTTC 14799 Query 111461 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGC 111519 |||||||| |||||| | |||||||| |||||| | || ||| |||| || || || Sbjct 14800 TCGTACTTCTCGTAGAGCGTCTCAAACTCGTCACCC-CAGCACTCGTAGAGTCCAGGAGC 14858 Query 111520 CTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTC 111579 | | || ||||| | | ||| | ||| | || || ||||||||||| || || Sbjct 14859 TTCATTGGGGCAGAACAAACTCCACTTGCCATTGGCTTCCACACGCTTCATGAACAGATC 14918 Query 111580 TGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAG 111639 || | ||| |||| | || | || | |||| | |||| ||| ||||| Sbjct 14919 GGGGACCCAAAGGGCGTAGAACAAGTCGCGCGCCCGATGCAACTCGTTACCGTGGTTCTT 14978 Query 111640 TCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGA 111699 || || || | |||||| | | ||| |||||||| ||||| || || | |||| ||| Sbjct 14979 GCGCAAGTCCAAGAACTCAAACACATCTGCGTGCCAAGGCTCCAGGTAAATAGCGAAAGA 15038 Query 111700 TCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 111756 ||||| || || || | || | || ||||| || || ||||||| || || | Sbjct 15039 CCCCTTGCGTTTACCTCCGCCCTGGTCCACGTAGCGAGCAGTATCGTTAAACACCCGCAA 15098 Query 111757 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTC 111815 ||| || || || |||| || || || || || || || || | || |||| | Sbjct 15099 CATGGGGATGATGCCATTGGACGAGCCGTTGGTGCCTCGGATGT-AGCTGTTGGTGGCAC 15157 Query 111816 TCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCG 111875 | | || || || ||||| || ||||||||||| ||||| ||||||| | Sbjct 15158 GGATGTTGTGCATACTAATGCCAATTCCTCCAGCCCACTTGGAGATGCAGGCACACTGCT 15217 Query 111876 TAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGG 111935 | || || | || || || | || ||||| |||| | || | | |||||| || Sbjct 15218 TCAGTGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATAGCCAGCAAGAAGCACGAGG 15277 Query 111936 ACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC 111995 ||| || || | ||| || ||||| |||||||| || || || ||||| |||| | || Sbjct 15278 ACAATTGGGGACGTGGCGTGCCAGCGTTGAAGAGCGTGGGCGTGGCGTGCGTGAAGA-AC 15336 Query 111996 CT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 112054 | |||||||| ||||| ||||||||| | | | ||||| | ||||||||| Sbjct 15337 TTCTGGGACATGAGCTCGTACGTCTCCAAGGCCGCCTTGATGTCGCTCTTGTGGATGCCT 15396 Query 112055 ATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA 112114 | || || ||||||| ||| | ||| || |||| | |||| | | || | Sbjct 15397 AGCGCCACGCGCATGATCATCTGCTGCGGCCGCTCCACCACTTTGCCGTTCACGCGGAAA 15456 Query 112115 AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 || |||| | |||| | ||||||| || ||||| Sbjct 15457 AGGTAGCCCCTCTCTAATGTTTTGAAGCCGAAGTA 15491 >seq141 Length=36708 Score = 140 bits (154), Expect = 4e-28 Identities = 355/528 (67%), Gaps = 14/528 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 14929 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 14988 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 122489 |||| || || ||||| |||| | || | ||| |||| | || ||| ||||| Sbjct 14989 CAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACTCCCAGCGAGTA-GAGCAGACG 15047 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT-AC 122548 || | ||| |||||||||||| | |||| | | |||||||| |||||||| | || Sbjct 15048 GTCAGCCACGAACTCAATGTACTGGCACATGAGCCCCGAGTTCATGCCGATGAGCTCGAC 15107 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 | ||||| | ||| | |||| | | ||| ||| | || || || |||||| ||| Sbjct 15108 A-GGGAGCGAGTCGCGCACGAACTCGTGCTCGATCACCACAGCGTCACGCACGATCTCGT 15166 Query 122609 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 122664 | | | ||| || || | | || | | | ||| || ||| || Sbjct 15167 GCACGCGGCTCTCCGGCAGCTTGTTGACCA-GCTTGGAGTACATGAGG--CA-GGCGAAG 15222 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 ||| ||| | ||||| || ||| || || || || ||||||| |||||| |||||| Sbjct 15223 TCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGAAGCTTAGACCAGGCATG 15282 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 ||||| |||||||| | ||| | || | |||||| || || |||||||||||||||||| Sbjct 15283 AGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATACCCTCC 15342 Query 122785 ACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGAC-TTTGCATCAAACCATTT 122843 || ||||| || | || ||||| | | |||| ||| || | || |||| || Sbjct 15343 ACTGCAGCAAAGGCCAGCAGCCGTTCCGGGTAGGA-CGACACGCGCGGGTCGCACCACTT 15401 Query 122844 CATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 | ||||| || || ||||||| | ||| || | ||| | ||||| Sbjct 15402 GAGCGCCCAGTTGGCTTTCTTCTGGACACACGGGATAGTCTCAATGGC 15449 >seq99 Length=40689 Score = 105 bits (116), Expect = 8e-18 Identities = 280/421 (67%), Gaps = 15/421 (4%) Strand=Plus/Plus Query 11443 GATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATT 11502 ||||| ||||| || ||||| || || |||| || | ||||| |||||| |||| || Sbjct 35266 GATCTGCCGATCGAATCGACCGGGACGCAGGATAGCCTTGTCAAGAATATCCGCGCGGTT 35325 Query 11503 AGTGGCCGCAATAACCACAATGCCAGTCTCATT---GTCAAAGCCATCCATCTCGGTGAG 11559 || | |||| ||||| | || |||| | || || |||||||||||| || Sbjct 35326 CGTACCAGCAAGCACCACCACACC---CTCACTTGAGTTGAAACCATCCATCTCGACCAG 35382 Query 11560 TAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACT-GCGTT 11618 | || |||| ||| | ||| | ||| || || || | | | | || || || | Sbjct 35383 AAGCTGGTTAAGTGTGTTTTCACGCTCGTCGTT-GCCGCCCGAGAAGTTGCCCTTGCTTC 35441 Query 11619 GCTTGC---CCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGG 11675 | || |||| ||||| || ||||||||||| ||||| || || || | || | Sbjct 35442 GTGCGCGTGCCACAGCATCGATTTCATCAATGAACACAATGCACGGAGCGTTCGCACGAG 35501 Query 11676 CGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT 11735 | | ||||||||| || || | | |||||||||||| |||||||| | |||| Sbjct 35502 CCTCCTTAAAGAGATCACGCACACGGGACGGACCCACACCAACGAACATCTCGATGAAGT 35561 Query 11736 TTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAG 11793 | |||| | || || |||||| || | | ||||| || |||| ||| || Sbjct 35562 CCGAACCAGA--AATGCTGAAGAATGGAACGCTAGCCTCACCAGCCGTGGCCTTGGCCAG 35619 Query 11794 GAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 || ||||| || ||||| || || |||| || || || ||||||||||||||| Sbjct 35620 CAGCGTCTTACCTGTACCGGGGGGGCCAACGAGTAGCGCACCCTTGGGGATCTTGGCACC 35679 Query 11854 A 11854 | Sbjct 35680 A 35680 >seq1918 Length=12940 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 8527 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 8468 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 8467 CCGGTAGGAGCTT 8455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628003039874400