Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq666 226 4e-54 seq141 188 9e-43 >seq666 Length=16246 Score = 226 bits (250), Expect = 4e-54 Identities = 872/1346 (65%), Gaps = 58/1346 (4%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || || |||| |||||| ||||| | |||| ||||| |||||||| || || || || Sbjct 14050 TACATGTTGGACGTGTAGGGCTCGATAGACTCGTTGTTGCCCAAGATCTGAGCAGTAGAA 14109 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTT 118299 || || |||||||| |||| || || ||| || ||||| | || | || | | Sbjct 14110 GCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGAAGACCGTGCTTGATCACATTC--T 14167 Query 118300 CCTTGAGAGCGTCCCAGTCGTA-------GTTGA-GCTTTGTCTCCCCCTGCCACATATC 118351 |||| || || |||| || | | || | || | |||| |||| || Sbjct 14168 CCTTCAGCGCAGCCCAATCCCAAAGTCCGGACGAAGGAGTGACACCCC-----ACATGTC 14222 Query 118352 AAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAAC 118411 ||||||| | ||| | | || ||||| |||| || ||||| || |||||| | Sbjct 14223 GAACTGGAAAACACCCTTGCTGGCCGGCGAGCCCTGGAAAGTCTCGTAGGGGCCC---AA 14279 Query 118412 CTCC--GCCAATTCGGAGCT-CGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCG 118468 |||| | |||| | | || ||| | | |||| || || || || || ||| Sbjct 14280 CTCCTTGGCAATCTCCATCGACGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTT 14339 Query 118469 AGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACA 118526 |||| | |||| ||| ||||||||| ||| || || || || || Sbjct 14340 CTTGTTCAACTCACGTGCCTGCTCGCTCTCAAACGCGTAGTT--CATAAGGATGAACGCA 14397 Query 118527 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG 118586 || || |||||||| ||||| | || | || || || | ||| || ||||| || || Sbjct 14398 TCAGCCAGACCTTGAACACCAATACCCACGGGACGGTGGCGCATGTTCGACTTGCGCGCC 14457 Query 118587 GTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTT 118645 ||| | || || || | || ||||| ||| | || || || || || ||||| Sbjct 14458 -TCTACGACCGGGTAGTAGTTGACGTCGATCACCTTGTTCAGGTTGCGCGTCACCACCTT 14516 Query 118646 TGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAG 118704 || | ||||| | | ||| ||| | || || || || | ||| || | | Sbjct 14517 GGTTACTTCATACAACCTTTTGTAGTTGAACACACCG-------TCCTCCACAAACATCG 14569 Query 118705 GAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAA 118764 | || || | ||||||| ||| ||||||| |||||| | ||||||||| || | Sbjct 14570 GCAGTGCCACCGACGCCAAATTGCACACAGCCACCTCATCAGGAGAAGTGTACTCCATCA 14629 Query 118765 TTTCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 118822 ||| ||||||||| || | || ||||||||||| | || || ||||| Sbjct 14630 CTTCACAGCACAAGTTGCTGGAGCGG--ATCGTGCCCAAGTTTTGCTGGTTCGACTTGCG 14687 Query 118823 GTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 118882 |||| || |||||||| |||||| |||| |||||||| | || | | || || Sbjct 14688 GTTAGCTGCGTCCTTGTACAGCATGAATGGAACACCCGTCTCAATCTGCGCGTCAAGGAT 14747 Query 118883 AGCCTTCCAGACATCGGCAGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTCTTCCTCG 118937 || ||| | | |||| ||| | | | ||| || || ||||| | |||| Sbjct 14748 GGCAAACCACAGTT-----GCTGTGCATTGATCGTCTTGCGAGCACGTCCCTCCTTCTCG 14802 Query 118938 TACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTA 118997 ||||| |||||| | |||||||| |||||| | ||| |||| || || || | | Sbjct 14803 TACTTCTCGTAGAGCGTCTCAAACTCGTCACCCCAGCACTCGTAGAGTCCAGGAGCTTCA 14862 Query 118998 TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 119057 | |||||||| | | ||| | ||| | || || ||||||||||| || || ||| Sbjct 14863 TTGGGGCAGAACAAACTCCACTTGCCATTGGCTTCCACACGCTTCATGAACAGATCGGGG 14922 Query 119058 ATCCAGAGCGCCGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACG 119116 | ||| || || |||| | || || ||| || || | | || || || || Sbjct 14923 ACCCAAAGGGCGTAGAACAAGTCGCGCGCCCGATGCAACT-CGTTACCGTGGTTCTTGCG 14981 Query 119117 CAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC 119176 ||| ||||| || || | | ||| |||||||| || |||||||| | |||| ||||| Sbjct 14982 CAAGTCCAAGAACTCAAACACATCTGCGTGCCAAGGCTCCAGGTAAATAGCGAAAGACCC 15041 Query 119177 CTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCAT 119233 ||| || || || |||||| || || | ||||| ||||||| || || | ||| Sbjct 15042 CTTGCGTTTACCTCCGCCCTGGTCCACGTAGCGAGCAGTATCGTTAAACACCCGCAACAT 15101 Query 119234 TGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGAC 119293 || ||||| |||| ||| ||| || || || || || || |||| | || Sbjct 15102 GGGGATGATGCCATTGGACGAGCCGTTGGTGCCTCGGATGTAGCTGTTGGTGGCACGGAT 15161 Query 119294 ATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAG 119353 | ||| || || ||||| || || |||||||| ||||| || |||| | | || Sbjct 15162 GTTGTGCATACTAATGCCAATTCCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTCAG 15221 Query 119354 ACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACAT 119413 || |||| || || || |||||||| ||| | || | | |||||| |||| Sbjct 15222 TGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATAGCCAGCAAGAAGCACGAGGACAA 15281 Query 119414 TTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-T 119472 ||| || | || || |||||||||||||| || || || ||||| |||| | || | | Sbjct 15282 TTGGGGACGTGGCGTGCCAGCGTTGAAGAGCGTGGGCGTGGCGTGCGTGAAGA-ACTTCT 15340 Query 119473 GGGACATCTTGTCGTAGGTCTCCAAG 119498 ||||||| ||||| ||||||||| Sbjct 15341 GGGACATGAGCTCGTACGTCTCCAAG 15366 >seq141 Length=36708 Score = 188 bits (208), Expect = 9e-43 Identities = 362/523 (69%), Gaps = 18/523 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | || ||| | ||||| Sbjct 14929 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 14988 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | || || |||||||| ||| | || | |||||| | | | ||| ||||| Sbjct 14989 CAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACTCCCAGCGAGTAGAGCAGACGG 15048 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | ||| |||||||||||| |||| | | |||||||| |||||||| | ||| Sbjct 15049 TCAGCCACGAACTCAATGTACTGGCACATGAGCCCCGAGTTCATGCCGATGAGCTCGACA 15108 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| ||| | |||| | | ||| || ||||||| || |||||||| |||| Sbjct 15109 -GGGAGCGAGTCGCGCACGAACTCGTGCTCGATCACCACAGCGTCACGCACGATCTCGTG 15167 Query 129967 AATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CACGGCAA 130019 | | | ||| | ||| | | ||| || |||| |||| | || ||| | Sbjct 15168 CACGCGGCTCTCCGGCAGCT-TGTTGACCAG---CTTG--GAGTACATGAGGCA-GGCGA 15220 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | ||| ||| | |||||||||||| |||||| || |||||||||| ||||| |||| Sbjct 15221 AGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGAAGCTTAGACCAGGCA 15280 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 ||||||| |||||||| | |||||| || | || || ||||| ||||||||||| |||| Sbjct 15281 TGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATACCCT 15340 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCAC 130198 |||| || || || | || || || | |||| || || | || ||||| Sbjct 15341 CCACTGCAGCAAAGGCCAGCAGCCGTTCCGGGTAGGA-CGACACGCGCGGGTCGCACCAC 15399 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCT 130241 || | |||||| | || || |||| || |||||||| |||| Sbjct 15400 TTGAGCGCCCAGTTGGCTTTCTTCTGGACACACGGGATAGTCT 15442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618406682406840