Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq666 201 1e-46 seq141 129 7e-25 seq99 114 2e-20 >seq666 Length=16246 Score = 201 bits (222), Expect = 1e-46 Identities = 436/644 (68%), Gaps = 9/644 (1%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| ||||||||||||| | || || || | ||||| | | | | Sbjct 15425 CCGCAGCAGATGATCATGCGCGTGGCGCTAGGCATCCACAAGAGCGACATCAAGGCGGCC 15366 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 |||||||| ||||| |||||||| | || | |||| ||||| || || || ||||| Sbjct 15365 TTGGAGACGTACGAGCTCATGTCCCAGAAGT-TCTTCACGCACGCCACGCCCACGCTCTT 15307 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| ||||| || ||| | |||||| ||||| |||||| | | || | |||| || Sbjct 15306 CAACGCTGGCACGCCACGTCCCCAATTGTCCTCGTGCTTCTTGCTGGCTATGCAGGACGA 15247 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| || | || || || | || || | | ||||||| ||||| ||||||||||| Sbjct 15246 CTCGATTGAGGGCATTTACGACACACTGAAGCAGTGTGCCTGCATCTCCAAGTGGGCTGG 15187 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 104519 || ||||| || || || | | | |||| || | || || || || || | Sbjct 15186 AGGAATTGGCATTAGTATGCACAACATCCGTGCCACCAACAGCT-ACATCCGAGGCACCA 15128 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || |||| || || || ||| | || || ||||||| || || ||||| | Sbjct 15127 ACGGCTCGTCCAATGGCATCATCCCCATGTTGCGGGTGTTTAACGATACTGCTCGCTACG 15068 Query 104580 TAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | | || | || || || ||||| ||| |||| | || || ||||| ||||||| Sbjct 15067 TGGACCAGGGCGGAGGTAAACGCAAGGGGTCTTTCGCTATTTACCTGGAGCCTTGGCACG 15008 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC 104696 | ||| | | |||||| | || ||||| ||||| ||| ||||| | ||| | Sbjct 15007 CAGATGTGTTTGAGTTCTTGGACTTGCGCAAGAACCACGGTAACGAGTTGCATCGGGCGC 14948 Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 104756 |||| | |||| ||| || ||| | || ||||| ||||||||| | || || | | || Sbjct 14947 GCGACTTGTTCTACGCCCTTTGGGTCCCCGATCTGTTCATGAAGCGTGTGGAAGCCAATG 14888 Query 104757 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAG 104815 |||| ||| | | || || || | | || ||||| |||| ||| ||| | |||||| Sbjct 14887 GCAAGTGGAGTTTGTTCTGCCCCAATGAAGCTCCTGGACTCTACGAGTGCTG-GGGTGAC 14829 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGC 104859 |||||||| | || ||| ||||||||| | || || || || Sbjct 14828 GAGTTTGAGACGCTCTACGAGAAGTACGAGAAGGAGGGACGTGC 14785 >seq141 Length=36708 Score = 129 bits (142), Expect = 7e-25 Identities = 191/270 (71%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 || || |||| ||| || ||||| || ||||| | || || | ||||| | Sbjct 15500 CTTATTGACACGTACATCAAGGACATTGTCGAGAAAACCCACCTGCTGCGTGCCATTGAG 15441 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 94791 || | |||||| | || |||||||| | ||||| | ||||||| || | || Sbjct 15440 ACTATCCCGTGTGTCCAGAAGAAAGCCAACTGGGCGCTCAAGTGGTGCGACCCG----CG 15385 Query 94792 CGT----TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 ||| |||| | || || || | || ||||| || ||||||||||||||||| Sbjct 15384 CGTGTCGTCCTACCCGGAACGGCTGCTGGCCTTTGCTGCAGTGGAGGGTATCTTCTTCTC 15325 Query 94848 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 || ||||||||| | || | |||||||||||||| ||||||||||| ||||| |||| Sbjct 15324 GGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTAAGCTT 15265 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| |||||||| ||| ||||||||||| Sbjct 15264 CTCGAACGAGCTCATCAGCCGTGACGAGGG 15235 >seq99 Length=40689 Score = 114 bits (126), Expect = 2e-20 Identities = 280/417 (67%), Gaps = 7/417 (2%) Strand=Plus/Plus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 ||||| ||||| || ||||| ||||| |||| || | ||||| ||||| |||| || Sbjct 35266 GATCTGCCGATCGAATCGACCGGGACGCAGGATAGCCTTGTCAAGAATATCCGCGCGGTT 35325 Query 9577 CGTCGCGGCGATGACAACAATACCTGTTTCATTA-TCAAAACCATCCATCTCTGTCAAAA 9635 ||| | || | || || | ||| | | | | | |||||||||||||| || || Sbjct 35326 CGTACCAGCAAGCACCACCACACCC-TCACTTGAGTTGAAACCATCCATCTCGACCAGAA 35384 Query 9636 GTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACT-GCGT--T 9692 | ||||||| || | ||| || || || || || | | | | || || || | | Sbjct 35385 GCTGGTTAAGTGTGTTTTCACGCTCGTCGTT-GCCGCCCGAGAAGTTGCCCTTGCTTCGT 35443 Query 9693 GCTT-TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 9751 || | |||| ||||| || ||||||||||| || ||||| || || | ||||| Sbjct 35444 GCGCGTGCCACAGCATCGATTTCATCAATGAACACAATGCACGGAGCGTTCGCACGAGCC 35503 Query 9752 ACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 9811 | | ||||||||| || ||||| | ||||||||||| |||||||| | |||| Sbjct 35504 TCCTTAAAGAGATCACGCACACGGGACGGACCCACACCAACGAACATCTCGATGAAGTCC 35563 Query 9812 GCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9871 | | ||| || ||| || || ||| ||||| || |||| ||| || || Sbjct 35564 GAACCAGAAATGCTGAAGAATGGAACGCTAGCCTCACCAGCCGTGGCCTTGGCCAGCAGC 35623 Query 9872 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 |||||||| ||||| || || |||| || ||||| || |||||||| ||| Sbjct 35624 GTCTTACCTGTACCGGGGGGGCCAACGAGTAGCGCACCCTTGGGGATCTTGGCACCA 35680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583233904386360