Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq706 179 1e-39 seq911 114 4e-20 seq3278 91.5 4e-13 seq2591 91.5 4e-13 seq144 91.5 4e-13 seq1959 89.7 2e-12 >seq706 Length=15625 Score = 179 bits (198), Expect = 1e-39 Identities = 851/1337 (64%), Gaps = 30/1337 (2%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || || ||| | || || || ||||| ||||||| || ||||||||||| || || || Sbjct 13235 GGTATTGATCTCGGCACGACGTATTCGTGTGTTGGGGTGTGGCAAAATGACCGCGTGGAG 13294 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || ||||| ||||| || || ||| | || || ||||| ||||| || || ||||| | Sbjct 13295 ATCATTGCCAATGACCAGGGCAACCGTACGACACCATCGTACGTAGCCTTCACCGAGTCG 13354 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 || || | || || ||| | || || || |||| || || | | || || || Sbjct 13355 GAACGACTTATCGGCGATGCAGCGAAGAACCAAGTGGCCATGAACGCGCACAACACTGTG 13414 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACA---CAATCTGAT 349441 ||||||| || || | || || | | || | || | || | || || ||| Sbjct 13415 TTTGATGTCAAACGTTTGATCGGCCGCAAGTTCACGGATA---CTGAAGTGCAGTCGGAT 13471 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | || || | || || | || | | || || || || | | ||| Sbjct 13472 ATCAAGCACTGGCCGTTCAAAGTGGCGCGCGGTCCCGAGGACAAGCCGCAAGTCGTGGTG 13531 Query 349502 GAATATAAAGGTGAA-CAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGT 349560 | | || || ||| | || || || ||||| || || || || ||||| | | Sbjct 13532 CAGTTCAAGGGCGAATCGAAGACG-TTCCAGCCCGAGGAGATATCGTCCATGGTGCTGAT 13590 Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTAC 349620 || ||| || ||||| || |||| | || | ||| | |||| || | || Sbjct 13591 CAAGATGCGCGAGATTGCAGAGGCATTCATCGGCAAGCAAGTGAAGAATGCGGTGGTGAC 13650 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 || || || ||||| ||||| | ||||| || || || ||||| || |||||| Sbjct 13651 GGTGCCGGCGTATTTCAATGACTCGCAGCGCCAAGCGACCAAGGATGCCGGAGTCATTGC 13710 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || || || || || | || ||||| || || || ||||| || ||||| || || || Sbjct 13711 TGGTTTGAACGTGCTGCGTATCATTAACGAGCCGACCGCTGCTGCTATTGCCTACGG-CT 13769 Query 349741 TG---ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || | |||| ||| | || | || | || || || ||| |||| || || || Sbjct 13770 TGGACAAAAAAGGAGG---CGAGCACAACGTGTTG--ATCTTCGATCTAGGCGGCGGAAC 13824 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 ||||||||||| || || || | || || ||||| || || || || || |||||||| Sbjct 13825 GTTTGATGTATCGCTGCTTACGATCGAGGAAGGAATCTTCGAGGTGAAGGCTACTGCTGG 13884 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 |||||| || | || || ||||| ||||| || ||||| || | ||||| || Sbjct 13885 TGATACGCACTTGGGAGGTGAAGACTTTGACAACCGTCTAGTCGAGTTCTTTGTGGCCGA 13944 Query 349918 ATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977 || ||||| || | | ||||| | || | | || |||| || || | Sbjct 13945 GTTCAAGCGCAAATACCACAGGGATATGTCGGCGAACCAGCGTGCTTTGCGCCGTCTCCG 14004 Query 349978 AACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAAT 350037 || ||||||||||| || ||||| | || || || | | || | | || || || Sbjct 14005 TACGGCGTGTGAACGGGCCAAGCGGACGTTGTCCACTTCGGCGCAGGCGTACATAGAGAT 14064 Query 350038 TGATTCTCTTGCT-GATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096 |||||| | |||| ||||||| ||||| || | || || ||||| || || || | Sbjct 14065 TGATTCGC-TGCTAGATGGCATTGATTTTAACTCGACCATCACCCGTGCGCGATTCGAGG 14123 Query 350097 AATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATG 350156 | | ||| || | || | || |||||||| || | |||| || || Sbjct 14124 ACCTCTGTTCCGAATTCTTCCGCAAGACGATGGATCCCGTCGCGCAAGTTCTACGTGACT 14183 Query 350157 CAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTC 350216 | ||| ||||||| || ||| | | || || || | || || || || || || |||| Sbjct 14184 CGAAATTGTCCAAGAACCAGGTGAACGAGGTGGTGCTGGTGGGCGGATCGACTCGCATTC 14243 Query 350217 CAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATT 350275 |||| || || ||||| | || | || || ||||| || | ||| || || || Sbjct 14244 CAAAGGTGCAGCAGTTGTTGGTGGACTACTTCAACGGCAAGGATCTGTTCAAG-TCGATC 14302 Query 350276 AATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAAT 350335 || || |||||||| || || || ||||| | || || || | ||| || ||| | | Sbjct 14303 AACCCCGATGAAGCGGTGGCGTACGGTGCCACCGTCCAAGCTGCCATTCTAAGTGGCAGT 14362 Query 350336 AAGAGTTC-----TAAAATTG-ATGATCTATTACTACTAGATGTAACTCCACTTTCGCTT 350389 |||| |||||| | ||||| |||| || ||||| | || | ||||| Sbjct 14363 ---GGTTCGTCGTCCAAATTGCAGGATCTGCTACTGCTGGATGTCGCGCCCTTGTCGCTC 14419 Query 350390 GGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCT 350449 ||||| ||||| | |||| ||| ||||| || || || | || | || || ||| Sbjct 14420 GGATTGGAAACCGCGGGTGGAGTTATGACCAAGCTCATCCCACGCAACACCACGGTTCCT 14479 Query 350450 ACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAA 350509 | || ||| || | || || || | || || || ||||| | || || || Sbjct 14480 GCTAAGAAGATGCAGTCGTTCTCGACGTACGCGGACAACCAGCCCGGCGTGCTGATCCAG 14539 Query 350510 GTATTTGAAGGTGAACG 350526 || |||||||| ||||| Sbjct 14540 GTGTTTGAAGGCGAACG 14556 >seq911 Length=12855 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || || || || || ||||| || || || || || || Sbjct 12054 CATGCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 11995 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || || || || || || || || ||||| || || ||||| ||||| Sbjct 11994 GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGG 11935 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| ||||| || ||||||||||| || || || || ||||| || || || || Sbjct 11934 GGGAATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTC 11875 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || ||||||||||| Sbjct 11874 CACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 11824 Score = 111 bits (122), Expect = 5e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || || || || || ||||| || || || || || || Sbjct 12282 CATGCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 12223 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || || || || || || || || ||||| || || ||||| ||||| Sbjct 12222 GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGG 12163 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| ||||| || ||||||||||| || || || || ||||| || || || || Sbjct 12162 GGGAATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTC 12103 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || |||||||| Sbjct 12102 CACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 12052 Score = 107 bits (118), Expect = 6e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || | ||||||||| || || || || || || | || || || || Sbjct 12491 AGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 12432 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || || ||||| || || ||||| ||||| ||||| ||||| || ||| Sbjct 12431 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 12372 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 |||||||| || || || || ||||| || || || || || || || || | ||| Sbjct 12371 TGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 12312 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || || || |||||||| Sbjct 12311 TTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 12280 >seq3278 Length=1315 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 701 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 642 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 641 CCCTGCTTCTCCA 629 >seq2591 Length=3353 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 838 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 779 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 778 CCCTGCTTCTCCA 766 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1697 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 1638 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 1637 CCCTGCTTCTCCA 1625 >seq144 Length=46776 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 38739 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 38798 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 38799 CCCTGCTTCTCCA 38811 >seq1959 Length=4451 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 2788 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 2847 Query 74548 TCGGGCA 74554 ||||||| Sbjct 2848 TCGGGCA 2854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515182781027267