Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq911 159 3e-34 seq1010 150 2e-31 seq414 149 5e-31 >seq911 Length=12855 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || || || || ||||| ||||| Sbjct 12051 CATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTC 12110 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | ||||| || |||||||| ||||| |||||||| || || || || Sbjct 12111 GGACTCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCA 12170 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| || |||| ||| | || | ||| ||||| Sbjct 12171 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 12230 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||||||||| | || |||| ||||| |||| |||||||| Sbjct 12231 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGCAT 12281 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || ||||| ||||| Sbjct 11824 ATGCAGATTTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 11883 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | ||||| || |||||||| ||||| |||||||| || || || || Sbjct 11884 GACTCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCAG 11943 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| ||| | || | ||| |||||| Sbjct 11944 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 12003 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || |||| ||||| |||| |||||||| Sbjct 12004 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGCAT 12053 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || || || || ||||| ||||| Sbjct 12279 CATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTC 12338 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | ||||| || |||||||| ||||| |||||||| || || || || Sbjct 12339 GGACTCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCA 12398 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| || |||| ||| | || | ||| ||||| Sbjct 12399 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 12458 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||| || || || |||| | ||| |||| || || Sbjct 12459 CATCCAGAAGGAGTCTACTTTGCACCTGGTGCTTCGTCTGCGCGGCGG 12506 >seq1010 Length=11520 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || || || || ||||| ||||| Sbjct 56 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTC 115 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | ||||| || || ||||| ||||| |||||||| || || || || Sbjct 116 GGACTCGATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCA 175 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| || |||| ||| | || | ||| ||||| Sbjct 176 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 235 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || ||||||||||| | || |||| ||||| |||| ||||| Sbjct 236 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGG 283 >seq414 Length=22499 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || ||||| ||||| Sbjct 227 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 168 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | ||||| || || ||||| ||||| |||||||| || || || || Sbjct 167 GACTCGATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAG 108 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| ||| | || | ||| |||||| Sbjct 107 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 48 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| | || |||| ||||| |||| ||||| Sbjct 47 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434898344825280