Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq412 134 1e-26 >seq412 Length=22564 Score = 134 bits (148), Expect = 1e-26 Identities = 406/626 (65%), Gaps = 12/626 (2%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 || || ||||||||||| || | |||| |||| || |||| |||||||| |||||| Sbjct 19579 TTCCCACTGCTGACGACCAAGAGAGTGTTCTGGCGCGGTGTGGCGGAGGAGCTTCTGTGG 19638 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCG-TCCCGGGGGGTGA-----AGATC 34333 ||| | || || | |||||| | || | || | | | | || | ||| Sbjct 19639 TTCATCAGTGGCG------ACACCAGTGCGCACACGCTGCAGCAGAAGGACATTCACATC 19692 Query 34334 TGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAG 34393 ||||||| | || || || || | | |||| | || ||| | | | || || | Sbjct 19693 TGGGACGGCAATGGATCGCGTGAGTATTTGGATAGTCGAGGGCTGCAGGCACGAGAAGTT 19752 Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGG 34453 || ||| | || ||||| || |||||||||||| | || ||||| || | || || Sbjct 19753 GGTGACCTTGGGCCGGTGTATGGGTTCCAGTGGCGCCATTTTGGTGCCAAATACACGGAC 19812 Query 34454 AGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTG 34513 | | ||||| || | | || || | || || ||| | ||||| ||| || Sbjct 19813 ATGCATGCGGATTACACTGATCAAGGTGTAGATCAACTGGCTGAGGTGATTCACAAGCTG 19872 Query 34514 AAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCT 34573 |||||| ||| | ||||||| | | || |||||||| |||||| Sbjct 19873 CGAACGAACCCAACCGACCGCCGGATCGTACTTTCGGCCTGGAACCCTGCTGATCTCAAC 19932 Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633 ||||||||| || || ||||||| |||| || || ||||| || |||| ||||| Sbjct 19933 GAGATGGCGCTGCCGCCCTGCCACATGTTCTGTCAGTTTTACGTTGCTGATGGAGAGCTA 19992 Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 || || ||| | || || || || | |||||||| | || ||||| ||||||||||| Sbjct 19993 TCGTGTCAGATGTACCAGCGCTCTGCTGACATGGGACTTGGTGTGCCATTCAACATTGCC 20052 Query 34694 AGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTG 34753 || ||||| ||||||||| || | || || || | || || ||||| ||| | Sbjct 20053 AGCTACGCGCTGCTCACGAGATTGGTGGCGCAGGTGGCTGGACTGAAACCTGGCGAGTTC 20112 Query 34754 GTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAG 34813 | ||| | || || || ||| | || ||||||||| | || | ||| | || || Sbjct 20113 ATTCATGTTATTGGCGACGCACATGTGTATCTGAACCACGTGGAACCGCTGCAGAAACAA 20172 Query 34814 CTGCAACGAGAGCCCCGACCGTTCCC 34839 || |||| ||| || || || || Sbjct 20173 CTTACACGAACGCCACGCCCATTTCC 20198 Score = 134 bits (148), Expect = 1e-26 Identities = 406/626 (65%), Gaps = 12/626 (2%) Strand=Plus/Minus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAG 6565 || || || || ||| |||| || || || | ||| | || | ||||||||| || Sbjct 20198 GGAAATGGGCGTGGCGTTCGTGTAAGTTGTTTCTGCAGCGGTTCCACGTGGTTCAGATAC 20139 Query 6566 ATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCG 6625 | ||| || || || | ||| | | ||| ||||| || || | || || || Sbjct 20138 ACATGTGCGTCGCCAATAACATGAATGAACTCGCCAGGTTTCAGTCCAGCCACCTGCGCC 20079 Query 6626 ATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCT 6685 | || ||||||||| ||||| || ||||||||||| ||||| || | |||||||| Sbjct 20078 ACCAATCTCGTGAGCAGCGCGTAGCTGGCAATGTTGAATGGCACACCAAGTCCCATGTCA 20019 Query 6686 CCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGG 6745 | || || || || | ||| || || ||||| |||| || ||||| || || |||| Sbjct 20018 GCAGAGCGCTGGTACATCTGACACGATAGCTCTCCATCAGCAACGTAAAACTGACAGAAC 19959 Query 6746 GTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACG 6805 ||||||| || || ||||||||| |||||| |||||||| || | | ||| Sbjct 19958 ATGTGGCAGGGCGGCAGCGCCATCTCGTTGAGATCAGCAGGGTTCCAGGCCGAAAGTACG 19899 Query 6806 ATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCT 6865 |||| | ||| |||||| || ||| ||||| | ||| || || | Sbjct 19898 ATCCGGCGGTCGGTTGGGTTCGTTCGCAGCTTGTGAATCACCTCAGCCAGTTGATCTACA 19839 Query 6866 CCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925 || || | | || ||||| | | || || | || ||||| || | ||||||| Sbjct 19838 CCTTGATCAGTGTAATCCGCATGCATGTCCGTGTATTTGGCACCAAAATGGCGCCACTGG 19779 Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGA 6985 ||||| || ||||| || | ||| || | || || | | | ||| || | |||| | Sbjct 19778 AACCCATACACCGGCCCAAGGTCACCAACTTCTCGTGCCTGCAGCCCTCGACTATCCAAA 19719 Query 6986 AAGTCTCGAGACCCGTGAGCGTCCCAGATCT-----TCACCCCCCGGGA-CGAGAGCTCC 7039 | || || || || | |||||||||| | || | | | | || | || | Sbjct 19718 TACTCACGCGATCCATTGCCGTCCCAGATGTGAATGTCCTTCTGCTGCAGCGTGTGCGCA 19659 Query 7040 TTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTAC 7099 |||||| | || || | ||||||||| |||||||| |||| || |||| || Sbjct 19658 CTGGTGT------CGCCACTGATGAACCACAGAAGCTCCTCCGCCACACCGCGCCAGAAC 19605 Query 7100 ACACGTTTCGTCGTCAGCAGCGGAAA 7125 || | || ||||||||||| || || Sbjct 19604 ACTCTCTTGGTCGTCAGCAGTGGGAA 19579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448241729500080