Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq139 194 4e-44 seq1010 138 3e-27 seq414 138 3e-27 seq911 136 9e-27 seq688 120 7e-22 >seq139 Length=36859 Score = 194 bits (214), Expect = 4e-44 Identities = 215/287 (75%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || ||||||||||| ||| ||| ||| ||||| || | ||||| | ||| ||| | | Sbjct 27321 ACTTTATATTTAATTTTTAGTGCTTTTGCTGGTGTTGTTGGTACAACATTATCTCTTTTA 27262 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTAC 7560 || || | |||||||| || ||| |||||| || | || ||| ||| | || Sbjct 27261 ATTAGAATGGAATTAGCACAACCTGGTAATCAAATTTTTATGGGAAATCATCAATTATAT 27202 Query 7561 AACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATG 7620 || ||| || |||| || ||||| ||| ||||| |||||||||| |||||||| | | | Sbjct 27201 AATGTTGTTGTTACTGCACATGCTTTTATTATGGTTTTCTTTTTAGTTATGCCTGCTTTA 27142 Query 7621 ATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680 || || ||||| || ||||| || |||||||||||||||||||| || |||||||||||| Sbjct 27141 ATTGGTGGTTTTGGTAATTGGTTTGTTCCTTTAATGATTGGTGCACCCGATATGGCTTTT 27082 Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 || | | || ||||| |||||||| ||| |||| || | ||||| Sbjct 27081 CCTCGTATGAATAATATTAGTTTTTGGTTATTACCACCAGCTTTATT 27035 Score = 131 bits (144), Expect = 4e-25 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| |||||||||||||| |||||||| || || |||||||||||||||||||| Sbjct 13628 GAAAATTTGTCCATCAGTAATAGAAATAACATTAGTTGGAATATAAGCAGAAACATCACC 13687 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | || |||||| || |||| ||| |||||||||| ||| |||| Sbjct 13688 AGCTTGAGTTTCAATAATAGGTAAAGCAGTTAATGAACCACCACCAATTTTTCTATT 13744 Score = 114 bits (126), Expect = 3e-20 Identities = 102/125 (82%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGC 6804 ||||| || ||||| || ||| |||||||||||||||||||||||||| | ||||| Sbjct 5169 AGCCTATTATCTTTAGCTGGTTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 5228 Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGA 6864 |||| ||| | || ||||||||||| |||| || ||||||| |||||||||||||| | Sbjct 5229 CCAA-ACTTTTTTAAAGGCAGCAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCA 5287 Query 6865 GTAAT 6869 | ||| Sbjct 5288 GCAAT 5292 Score = 109 bits (120), Expect = 1e-18 Identities = 134/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | ||||||||| ||||||||||| | || || | |||||| Sbjct 26816 AAAGGTAATCTATGAAAACTTAAACCAGGAGCTCTCATATTATAAATAGTTGAAATAAAA 26875 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| | || || ||||||| | |||||||||||| || |||||||| Sbjct 26876 TTAATAGCACCTAATAATGATGAAATACCTGTTAAATGTAAACTAAAAATAGCTAAATCT 26935 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || ||||| || |||| | || ||| || || |||||||| || || Sbjct 26936 ACAGAAGGTCCTGAGTGTGCTTGTACACTTGA---TAATGGTGGATAAACTGTCCAACCA 26992 Query 371542 GT 371543 || Sbjct 26993 GT 26994 Score = 104 bits (114), Expect = 6e-17 Identities = 86/104 (83%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| |||||||||||||| || |||||||||||||| | | ||||| ||||| || || Sbjct 26638 TTCTGGATGACCAAAAAACCAAAATAAATGTTGATATAATACTGGATCTCCTCCACCAGA 26697 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| |||| |||||| ||||||||||||||||| |||| Sbjct 26698 AGGATCATAAAAAGAAGTATTTAAATTTCTATCAGTTAATAACA 26741 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 1859 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 1918 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 1919 GTAACATGATGTATAGGGTCTGACAC 1944 Score = 100 bits (110), Expect = 7e-16 Identities = 102/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 5856 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 5797 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| || |||||| | || | ||||| ||| | || Sbjct 5796 GACTCCCGTCAATTCCTTTGAATTTCAATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 5737 Query 7850 TACGCGTTAGCT 7861 ||||||||||| Sbjct 5736 AACGCGTTAGCT 5725 Score = 96.9 bits (106), Expect = 8e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 5022 CAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAA 5081 ||||| | || || || |||||||||| | |||| |||||||||||||||||||||||| Sbjct 13954 CAATATTTAGCACCTTATACAGGTTGTGCTTTAGGTGAATATTTTAGAGATAATGGTAAA 13895 Query 5082 CATGCTTTAATCATCTACGATGATTTAAGTAAACAA 5117 |||||| |||| | || ||||||||| |||||| Sbjct 13894 CATGCTGTAATTTTTTATGATGATTTATCAAAACAA 13859 >seq1010 Length=11520 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 277 CGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 218 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || ||||| || ||||| ||| Sbjct 217 CGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCT 158 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| ||||| || ||||| | ||| || | |||||||| | | Sbjct 157 TCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGC 98 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||| |||| || || | ||| | ||||| Sbjct 97 GTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 57 >seq414 Length=22499 Score = 138 bits (152), Expect = 3e-27 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 7 CGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 66 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || ||||| || ||||| ||| Sbjct 67 CGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCT 126 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| ||||| || ||||| | ||| || | |||||||| | | Sbjct 127 TCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGC 186 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||||||||| |||| || || | ||| | ||||| || Sbjct 187 GTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATCTT 230 >seq911 Length=12855 Score = 136 bits (150), Expect = 9e-27 Identities = 165/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 12045 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 11986 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||| || ||||| || Sbjct 11985 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCC 11926 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || || || ||||| || ||||| | ||| || | |||||||| | Sbjct 11925 TTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 11866 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||||||| |||| || || | ||| | ||||| || Sbjct 11865 CGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCATCTT 11821 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 12273 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 12214 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||| || ||||| || Sbjct 12213 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCC 12154 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || || || ||||| || ||||| | ||| || | |||||||| | Sbjct 12153 TTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 12094 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||||||| |||| || || | ||| | ||||| Sbjct 12093 CGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 12052 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| | ||| || || || |||| ||||| ||| || || | || || Sbjct 12491 AGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 12432 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || ||||| ||||||||||| Sbjct 12431 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 12372 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||||| || ||||| | ||| || | |||||||| | |||||||||| Sbjct 12371 TGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 12312 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 12311 TTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 12280 >seq688 Length=17951 Score = 120 bits (132), Expect = 7e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| || | || || | || || || |||||||| || |||||||| Sbjct 3732 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3673 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || ||||| ||||| || ||||||||||| ||||| || ||||| || || Sbjct 3672 AGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGTCA 3613 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCA 225691 ||| |||| || | |||||||| | |||||| ||||||||||||| Sbjct 3612 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCA 3567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192474834640166