Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1010 141 2e-28 seq414 141 2e-28 seq911 138 3e-27 seq688 122 2e-22 >seq1010 Length=11520 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || |||||||| || || ||||| || ||| Sbjct 60 CAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 119 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| || |||||||||||||| ||||| || || || |||||||| Sbjct 120 TCGATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAGCAG 179 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 180 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 239 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 240 CAGAAGGAGTCGACGCTGCACCTGGT 265 >seq414 Length=22499 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || |||||||| || || ||||| || ||| Sbjct 224 CAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 165 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| || |||||||||||||| ||||| || || || |||||||| Sbjct 164 TCGATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAGCAG 105 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 104 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 45 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 44 CAGAAGGAGTCGACGCTGCACCTGGT 19 >seq911 Length=12855 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || || |||||||| || || ||||| || ||| Sbjct 11827 CAGATTTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 11886 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| || || ||||||||||| ||||| || || || |||||||| Sbjct 11887 TCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCAGCAG 11946 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 11947 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 12006 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 12007 CAGAAGGAGTCGACGCTGCACCTGGT 12032 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || |||||||| || || ||||| || ||| Sbjct 12055 CAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 12114 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| || || ||||||||||| ||||| || || || |||||||| Sbjct 12115 TCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCAGCAG 12174 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 12175 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 12234 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 12235 CAGAAGGAGTCGACGCTGCACCTGGT 12260 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || |||||||| || || ||||| || ||| Sbjct 12283 CAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 12342 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| || || ||||||||||| ||||| || || || |||||||| Sbjct 12343 TCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCAGCAG 12402 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 12403 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 12462 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || |||| || || Sbjct 12463 CAGAAGGAGTCTACTTTGCACCTGGT 12488 >seq688 Length=17951 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || ||||| || || ||||| || ||| Sbjct 3548 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCCGAC 3607 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||| || |||||||| || || || |||||||| ||||| ||||| || |||||||| Sbjct 3608 AGCATTGACAACGTCAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 3667 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || | || || ||| || Sbjct 3668 CGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTACAACATC 3727 Query 178104 CAAAA 178108 || || Sbjct 3728 CAGAA 3732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203674305268666