Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq911 181 1e-40 seq1010 176 4e-39 seq414 176 4e-39 seq688 150 2e-31 seq67 113 4e-20 >seq911 Length=12855 Score = 181 bits (200), Expect = 1e-40 Identities = 181/232 (78%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 12051 GCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 11992 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||||||||| ||||||||||| ||||| | ||| Sbjct 11991 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 11932 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || ||||||||| ||||| ||||| ||| | | | | ||| || ||||| Sbjct 11931 AATGCCTTCCTTGTCCTGAATTTTCTGCTT-GACGTTGTCGATCGAGTCCGACGGCTCCA 11873 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | |||| ||| ||||| || || ||||||||||| |||||||||||||| || Sbjct 11872 CGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCATCTT 11821 Score = 178 bits (196), Expect = 1e-39 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 12279 GCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 12220 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||||||||| ||||||||||| ||||| | ||| Sbjct 12219 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 12160 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || ||||||||| ||||| ||||| ||| | | | | ||| || ||||| Sbjct 12159 AATGCCTTCCTTGTCCTGAATTTTCTGCTT-GACGTTGTCGATCGAGTCCGACGGCTCCA 12101 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| ||| ||||| || || ||||||||||| ||||| ||||||||| Sbjct 12100 CGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 12051 Score = 176 bits (194), Expect = 4e-39 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | |||||| |||| || ||||||||| ||||| |||||| Sbjct 12506 CCGCCGCGCAGACGAAGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 12447 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| ||||||||||| ||||| | |||| Sbjct 12446 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 12387 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||||| ||||| ||| | | | | ||| || |||||| Sbjct 12386 ATGCCTTCCTTGTCCTGAATTTTCTGCTT-GACGTTGTCGATCGAGTCCGACGGCTCCAC 12328 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| ||| ||||| || || ||||||||||| ||||| ||||||||| Sbjct 12327 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 12279 >seq1010 Length=11520 Score = 176 bits (194), Expect = 4e-39 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 283 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 224 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| ||||||||||| ||||| | |||| Sbjct 223 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 164 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| || || ||||| ||| | | | | ||| || |||||| Sbjct 163 ATGCCTTCCTTGTCCTGAATCTTCTGCTT-GACGTTGTCGATCGAGTCCGACGGCTCCAC 105 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| ||| ||||| || || ||||||||||| ||||| ||||||||| Sbjct 104 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 56 >seq414 Length=22499 Score = 176 bits (194), Expect = 4e-39 Identities = 179/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 1 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 60 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| ||||||||||| ||||| | |||| Sbjct 61 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 120 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| || || ||||| ||| | | | | ||| || |||||| Sbjct 121 ATGCCTTCCTTGTCCTGAATCTTCTGCTT-GACGTTGTCGATCGAGTCCGACGGCTCCAC 179 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| ||| ||||| || || ||||||||||| ||||| |||||||| || Sbjct 180 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATCTT 230 >seq688 Length=17951 Score = 150 bits (166), Expect = 2e-31 Identities = 150/192 (78%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| || || ||||| |||| |||||||||||||||||||| | Sbjct 3734 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 3675 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||| ||||| | || | || ||||||||| |||||| ||||| ||| | Sbjct 3674 TCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTT-GACGTTG 3616 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | ||||| || |||||| |||| ||| || || || |||||||| ||||| || Sbjct 3615 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 3556 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 3555 AAGATCTGCATG 3544 >seq67 Length=45614 Score = 113 bits (124), Expect = 4e-20 Identities = 100/124 (81%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || ||||| ||||| | |||||| ||||| || ||||||||| ||||| ||||| Sbjct 11650 CCACCACCGCGCAGACGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCC 11591 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGC 41751 || || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| || Sbjct 11590 GACAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGC 11531 Query 41752 GGGA 41755 |||| Sbjct 11530 GGGA 11527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462282682006800