Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq7786 176 1e-38 seq4521 113 1e-19 seq1792 113 1e-19 seq15494 91.5 3e-13 seq15271 91.5 3e-13 seq9443 91.5 3e-13 >seq7786 Length=29839 Score = 176 bits (194), Expect = 1e-38 Identities = 679/1056 (64%), Gaps = 51/1056 (5%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| || || |||||||| ||||||| ||||| |||||||||| ||| |||||| Sbjct 21067 CTCCTTRTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCGTCAAG 21008 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 21007 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 20948 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || |||| |||| | |||| | || || |||| ||| || || || Sbjct 20947 CTTCCACACCTGACCGCTGGTCGGCTCCACCTCACCTGTCAGCATCTTGATCAGCGTCGA 20888 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTG-------GAGTTCAGCGATACCT 319222 || || |||||||| |||| || |||| | | ||| || || || Sbjct 20887 CTTACCGGCACCGTTGGGTCCCAGTACGGCGATACGGCTCGACAGAGCGCA-CGTCAC-- 20831 Query 319223 GGGCATTCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGC 319282 || || ||||| | | || |||||||| |||| | || ||| Sbjct 20830 GGAGAT----GTTGTTGATCGACGGCTTGGGGGTACCCGGGTACTGGTACGA-ACAGTTT 20776 Query 319283 GT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGG 319341 || || ||||||| |||| |||| | | ||||| || ||||| ||| Sbjct 20775 GTCAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCGGCAAGGAAACCAGGCTCCGGG 20716 Query 319342 AACTTCCACGTGG---TCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGC 319398 || | || || ||| || |||| || ||||||| | | ||||| | Sbjct 20715 AATATGAACTTGACGTTCTCCGACTCG---AGCTCGTAGTAGGCCTTGGCCTCGGGCTTC 20659 Query 319399 TTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAA 319458 | || ||| |||| |||||| || |||||||| |||| ||||| || | ||||| Sbjct 20658 TGCTCCACAAACTTGGACAGGTTACCCTTGTAGATCTTGAGCTTACGGGTC---TCGTAG 20602 Query 319459 TGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCAC 319518 || || || ||| || |||| ||||||||| || |||||||| ||||| || | | | Sbjct 20601 TGAATGATGTTGGTACAGACAGTGTCGAGGAAGCCAGAGTCGTGCGACACCATGATGGAA 20542 Query 319519 GAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGA 319578 | |||| | | ||| | ||||||| | || |||| ||||| ||| | Sbjct 20541 GTCACGTTCGTCAGGCTCGTCAGGTAGTTCTCCAGCCACGCAACGTTCTTGACATCCAAG 20482 Query 319579 TGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 319638 ||||| || ||||| ||||||||||| | | || ||| | ||||| ||||| || || Sbjct 20481 TGGTTCGTGGGCTCATCAAGAAGCAGAATGTCGGCCTTCTGCAGCATGGCACGGGCCAGC 20422 Query 319639 GCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAATA 319698 | |||||||| ||||| || || ||||||||| | || ||| || || Sbjct 20421 TCCAGTTTCATCTTCCAACCACCCGAAAGAGTGCCCA------CACCCTGGGCCTGCATC 20368 Query 319699 TC------AAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTT 319752 || |||||||| | || || ||| || | || | | |||| Sbjct 20367 TCGGGGGTGAAGCCAACGCCGGCAAGGGTGTCCTCGACCTCCTTGCGGGGC---GTGTT- 20312 Query 319753 TCCTTTACTTGTTCATCATTGGC---AATGAAGTCAATGATAGCCGTGTTAGAATCGGAC 319809 ||| | | || |||| | | ||||||||| | | | | | || || || Sbjct 20311 --CTTCA---GGTCCTCATCGACAAGAATGAAGTCCACCACGGACAGCTCAGCCTCCGAA 20257 Query 319810 CCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAG-AGGGGAACCCTTC 319868 | | || | ||| || ||| | |||| || | | | ||| | |||||| || || Sbjct 20256 GCCTGCAGGTTGTGCTCAACGAACACAGTCTTGAGCTCGT-CGCGGCTGGGGAAGCCCTC 20198 Query 319869 AAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACA 319928 |||||||||||| || ||||||||||| || || ||||| ||||| || || || Sbjct 20197 GAGCTGGCCGTTCGAGATGGCGCGCATCAGCGTCGACTTACCACAACCGTTGGGACCGCA 20138 Query 319929 CAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCC 319988 ||||||||| |||| || || || ||| | || | ||||||||| ||||| | || Sbjct 20137 CAGACCGTAACGGTGGCCACGCTTGAGGCGAAGACGAGCGTTGTTCAGCAGAATCATACC 20078 Query 319989 ACCATATGCCAGAGAAAATTCACAATCACACAGATC 320024 ||| || || || || || ||||| | ||||| || Sbjct 20077 ACCGTAGGCAAGCGAGAACTCACAGTTGCACAGGTC 20042 >seq4521 Length=6430 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 6231 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 6290 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6291 CCCACGGTGGGC 6302 >seq1792 Length=1024 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 107 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 166 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 167 CCCACGGTGGGC 178 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 685 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 744 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 745 CCCACGGTGGGC 756 >seq15494 Length=1106 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 34 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 93 Query 165771 CCACG 165775 ||||| Sbjct 94 CCACG 98 >seq15271 Length=1700 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 121 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 62 Query 165771 CCACG 165775 ||||| Sbjct 61 CCACG 57 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 1648 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 1589 Query 165771 CCACG 165775 ||||| Sbjct 1588 CCACG 1584 >seq9443 Length=2835 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 165 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 106 Query 165771 CCACG 165775 ||||| Sbjct 105 CCACG 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057613014689210