Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5234 91.5 2e-13 >seq5234 Length=8456 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || ||||| || ||||| || ||| | || ||||| |||||||| ||||| ||||| Sbjct 5237 ATGTACGTGTCAATGAGCAGTGAGTAGACCTCCGAGTGGATGTTCTCGATGGCGATCTGG 5178 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTA 17351 |||||||| |||||||| || || | | || ||||| ||| |||| || | Sbjct 5177 AATCCGTAGAAGCATCGAGCCTCAGGCACCTGCACTTCATTACTGAA--GTTCATGGCCA 5120 Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 || ||||||||||| |||||||| || ||||| || || | | ||||| ||||| Sbjct 5119 AGTTCTCGTTCACGATTCCGTCGCTGGCTGCGAAGAAGGCGAGCACGTGCTTGATGAA 5062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517444892095560