Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq6779 111 2e-19 seq5234 104 2e-17 >seq6779 Length=4860 Score = 111 bits (122), Expect = 2e-19 Identities = 302/459 (66%), Gaps = 10/459 (2%) Strand=Plus/Plus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||||| |||||||| || || | || || || | ||||| | ||||| || | Sbjct 657 ACATTAAGCACGCGAAATCCGTGTGCATGCCCTCATCACGACTGATCATCTCGTTTGAGA 716 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCG 16313 | | | || ||||| || || ||||| | |||||| | | | ||||||||||| Sbjct 717 AGCTCAGACCAGGCATAAGACCGCGCTTCTTAAGCCAGAAAACGGAACAAAATGACCCCG 776 Query 16314 AAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG---CAT 16370 ||||||| ||||| || || | || || || | | || || ||||||| | || Sbjct 777 AAAAGAAGATACCTTCCACTGCAGCGAACGCTAGCAGACGCTCTGCGTACGACGACACAC 836 Query 16371 CTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTT 16430 | || |||||| | |||| | ||| || | | | ||| || || | Sbjct 837 GCGGGTCACA---CCATTTTAGCGCCCAGTTGGCCTTCTTCTGGACACATGGGATAGTCT 893 Query 16431 CTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTA 16490 | || || | ||| | ||||| ||| || | || || || ||||| || | Sbjct 894 CGATAGCACGTAGCAAGTGGTCTTTCTCCACGGCGTCCTTGATGTATGTGTCAATAAGCA 953 Query 16491 AACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAG 16550 |||| || ||||| || ||||| || || ||||| || || |||||||| |||| Sbjct 954 GCGAATACACCTCCGAGTGGATATTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGAG 1013 Query 16551 CCTCCGCTATTTGTACTTCC--ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACC 16608 | |||| ||| || ||||| || || || | ||||||||||| || |||||||| Sbjct 1014 CTTCCGGTATCTGCACTTCATTACTGAAGTTCATG--GCCAGGTTCTCGTTGACGATACC 1071 Query 16609 GTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 |||||| ||||| || ||||||| | || ||| ||||| Sbjct 1072 GTCACTAGCAGCGAAGAACGCCAGAACGTACTTGATGAA 1110 >seq5234 Length=8456 Score = 104 bits (114), Expect = 2e-17 Identities = 299/453 (66%), Gaps = 8/453 (2%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || |||||||| || | || ||||| | ||||| || ||||| || || | Sbjct 5510 AGGCAGGCGAAGTCCGTGTGCATACCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTG 5451 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | || ||||| || || ||||| | |||||| || | |||| || || ||||| || Sbjct 5450 AGTCCAGGCATGAGGCCACGCTTCTTAAGCCAGAAGATGG-AGCAGAAGGAACCCGAGAA 5392 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 ||| || |||||||| | |||||||| | || || |||| ||| | | | | Sbjct 5391 GAAGATGCCCTCAACGGCAGCAAAAGCCAGTAGACGCTCCGGGTAGGAGGACACACGAGG 5332 Query 16378 A-CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGG 16436 || | ||| || | |||| | ||||| | | | || || || || || | Sbjct 5331 GTCGCA-CCACTTGAGCGCCCAGTGTGCTTTCTTCGTGACGCACGGAATGGTCTCAATCG 5273 Query 16437 CCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 | |||| | || || || ||| | || ||||| ||||| || | || Sbjct 5272 CACGCAACAGATGATCCTTCTCGATCGCATCCTTGATGTACGTGTCAATGAGCAGTGAGT 5213 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556 | | || ||||| |||||||| ||||| ||||| ||||| ||||||||||||||||| | Sbjct 5212 AGACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAATCCGTAGAAGCATCGAGCCTCAG 5153 Query 16557 CTATTTGTACTTC--CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614 | || ||||| || || || | |||| |||||| |||||||| ||||| || Sbjct 5152 GCACCTGCACTTCATTACTGAAGTTCAT--GGCCAAGTTCTCGTTCACGATTCCGTCGCT 5095 Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 || || || || || | | |||||| ||||| Sbjct 5094 GGCTGCGAAGAAGGCGAGCACGTGCTTGATGAA 5062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511314885150440