Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5234 149 7e-31 seq10576 107 2e-18 >seq5234 Length=8456 Score = 149 bits (164), Expect = 7e-31 Identities = 410/620 (66%), Gaps = 15/620 (2%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| || ||| | ||||||||| | ||| || | ||||| || || ||||| Sbjct 5507 CAGGCGAAGTCCGTGTGCATACCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGT 5448 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 || ||||| ||||||||||| |||||||| || ||||| ||| || || || || ||||| Sbjct 5447 CCAGGCATGAGGCCACGCTTCTTAAGCCAGAAGATGGA-GCAGAAGGAACCCGAGAAGAA 5389 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG-----CGCTG-TC 24307 || || || || || ||||| || | || | || || || || | || Sbjct 5388 GATGCCCTCAACGGCAGCAAAAGCCAGTAGACGCTCCGGGTAGGAGGACACACGAGGGTC 5329 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 | | |||||| | ||||| | || ||||| | || || || || ||||| || || Sbjct 5328 --GCA-CCACTTGAGCGCCCAGTGTGCTTTCTTCGTGACGCACGGAATGGTCTCAATCGC 5272 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 | || |||| | || || | ||| || | || || ||||| | || || Sbjct 5271 ACGCAACAGATGATCCTTCTCGATCGCATCCTTGATGTACGTGTCAATGAGCAGTGAGTA 5212 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 | ||||| || ||||| || ||||| || || ||||||||||| |||| |||||| | Sbjct 5211 GACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAATCCGTAGAAGCATCGAGCCTCAGG 5152 Query 24488 AATCTGTACTTCTATACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCGTCACTG 24545 | ||| ||||| ||| || |||| || || || || ||||| |||||||| ||| Sbjct 5151 CACCTGCACTTCATTACTGAA--GTTCATGGCCAAGTTCTCGTTCACGATTCCGTCGCTG 5094 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 24605 ||||| || || || | || || || || || | |||| || || || || Sbjct 5093 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTAAGCTTGGTC 5034 Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 ||||| |||| || | | || | || || | ||||| || || ||||| ||| Sbjct 5033 CAATCCTTGAGGTCGTGCACCAGGTCGATCTCCTCAGCAGTCCAGAAGGAGGCCTCGGCC 4974 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 24725 || || ||||| | ||| | || || | || || || || | ||| || | || ||| Sbjct 4973 TTCTTGTACATCTGCCACACTTCGTGCTCCTGGATAGGGAAGAGAACGAAGCGGTTGGGA 4914 Query 24726 TTTTTTGCAAGGATTGGTTC 24745 || | | |||| ||||| Sbjct 4913 TTCTCCACGAGGAACGGTTC 4894 >seq10576 Length=3682 Score = 107 bits (118), Expect = 2e-18 Identities = 669/1069 (63%), Gaps = 10/1069 (1%) Strand=Plus/Plus Query 53431 CGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTC 53490 || ||| | ||| |||| || || || |||||||| ||||| || || || |||| Sbjct 1104 CGTCTCCATTGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCACTAGCTTG 1163 Query 53491 CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAAT 53550 | ||| || || | ||| || | ||| || ||||| || || | || || || ||||| Sbjct 1164 CTTGCTCTCGAACGCATAGTTCATGAGGATGAACGCATCAGCCAGACCCTGGACGCCAAT 1223 Query 53551 ACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAAT 53610 ||| || || | ||| | | | || || | ||| |||| | |||||| || || | Sbjct 1224 ACCAATGGGGCGATGACGCATGTTGGACTTCCGAGCCTCTGCTACAGGATAGTAGTTGAC 1283 Query 53611 ATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAA 53670 || || | || |||||||| | || || |||||||| || | |||||| | | Sbjct 1284 GTCAATGACCTTGTTGAGGTTGCGAGTGATCACCTTGACCACTTCATACAGTTTCTGGTA 1343 Query 53671 ATCAAATTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGC 53730 || || || || || ||| || || || | ||| |||| || || || || Sbjct 1344 GTCGAACACGCCCTCGTCCACGAACTTGGGCAGCGCCACAGACGCCAAGTTGCACACTGC 1403 Query 53731 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 53790 ||||||| | || || | || | ||| ||| | || || | ||| || Sbjct 1404 CACCTCATCGGGCGACGTGTACTCCATCACCTCGCAGCATAAGTTGCTGGAGCGGATCGT 1463 Query 53791 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGT 53850 || | || || || || ||| ||| || ||||| || || || || ||| Sbjct 1464 GCCCAGGTTCTGCTGGTTCGACTTGCGGTTGGCTGCGTCCTTGTAGAGCATAAAGGGCAC 1523 Query 53851 ACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGA 53910 || || || ||||| | || | || || ||| | | || || || | Sbjct 1524 TCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGCGTTAATGGTC-- 1581 Query 53911 TTTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAA 53968 || | | | | ||| | ||||| | ||||| |||||||||||||||||| Sbjct 1582 TTCCGAGCGCGTCCTTCCTTCTCGTACTTTTCATACAGCGCTTCAAACTCGTCTCCCCAG 1641 Query 53969 ACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 54028 | || | |||||| ||| | ||||| | | ||||| || | ||| | Sbjct 1642 CACTCGTAGAGACCAGGAGCTTCGTTAGGACAGAATAGACTCCACTTACCATTGGCCTCC 1701 Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATG 54087 |||| ||||| ||||||||||| | ||| || || || || || || | | | || Sbjct 1702 ACTCTCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAGAACAAG-TCACGAGCGCGGTG 1760 Query 54088 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 |||||| || ||||| ||||| |||||| | | | || | ||||| || Sbjct 1761 CAGCTCGTTGCCGTGGTTCTTGCGCAGATCCAGGAACTCGAACACGTCTGCGTGCCATGG 1820 Query 54148 TTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 54207 ||||| || || | | ||| || || ||| ||||| || | || | ||| Sbjct 1821 CTCCAAATAGATAGCAAAGGATCCTTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGC 1880 Query 54208 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 54267 |||| ||| | || | || ||| || ||||| |||||||| | ||||| || ||| Sbjct 1881 CGTGTCGTTAAACACACGCAGCATGGGGATAATGCCATTGGAGGAGCCATTCGTGCCGCG 1940 Query 54268 GATATAGCTTCCACTGGCACGAATATTACTAAT--TGATAGACCTATCCCCCCTGCCATT 54325 ||| ||||| |||| || || || || |||| || || || || ||| Sbjct 1941 GATGTAGCTGTTGGTGGCTCGGATGTTGTGCATACTGATG--CCAATACCTCCCGCCCAC 1998 Query 54326 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 54385 || || || | |||||| | || | ||| || ||||||||||| || |||||| | Sbjct 1999 TTGGATATGCACGCGCATTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCATCCTGC 2058 Query 54386 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 54445 || | ||| ||||| ||||| || |||| || || || || || | ||| Sbjct 2059 ATTGCCAATAGGAAACAAGAAGACAGCTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTA 2118 Query 54446 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGA 54494 || | |||||||| || | |||| || | || | ||||||||||| Sbjct 2119 GGGGTCGCGTGCGTGAAGAACTTTTGCGACATGAGCTCGTACGTCTCGA 2167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593606069198160