Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq12351 244 1e-59 >seq12351 Length=7116 Score = 244 bits (270), Expect = 1e-59 Identities = 411/587 (70%), Gaps = 6/587 (1%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || || ||||||||||| || || ||||||||||| || | ||||||||||| || || Sbjct 5268 AGTGGTTCCACGTGGTTTAGATACACGTGCGCGTCACCGATAACGTGGATGAACTCGCCA 5209 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTG 145803 || | || || || | || || || | |||||||| | ||||||||| |||||| Sbjct 5208 GGTTTCAGTCCAGTCACTTGCGCAACAAGCCGCGTCAGCAGCGCGTAGCTGGCGATGTTG 5149 Query 145804 AAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCG 145863 || ||||| || || |||||||| |||| |||||||||| |||||| || | |||||| Sbjct 5148 AATGGCACGCCAAGTCCCATGTCGGCCGAACGCTGGTACATCTGGCACGATAATTCCCCG 5089 Query 145864 CCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCC 145923 | ||||||||||||||||| | | |||||| || ||||| ||||| || || || Sbjct 5088 TCGGCCACGTAGAACTGGCAGAACATGTGGCAAGGTGGCAGTGCCATCTCGTTGAGATCA 5029 Query 145924 GCCGGGTTCCAGGCGGTGAGGACGAGCC-TCCTGCTCTCGGGGTTCCTCTTGATCTCCCC 145982 ||||||||||| || | ||||| | || || | || || ||| | | || Sbjct 5028 GCCGGGTTCCACGCCGACAGGACAATCCGTCGGTCAGTC-GGATTCGTACGCAGCTTGTG 4970 Query 145983 TATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGT 146041 |||| ||| || |||||||| || || || ||| || | | || | |||| || Sbjct 4969 AATCACCTCCGCAAGTTGGTCCACCCCTTGGCCAGTGTAGTCCG-CATGCATGTCCGTGT 4911 Query 146042 ACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCC 146101 || ||| || ||||| | ||||||||| ||||| || || || |||||||| |||| Sbjct 4910 ACTTGGCACCAAAGTGACGCCACTGGAAGCCGTAAACCGGTCCAAGGTCCCCAACTTCCC 4851 Query 146102 TGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGA 146161 | | ||| || | | | | | || || || || ||| |||||||||| | || Sbjct 4850 GATTCGGCAGTCCTCGACTATCCAAGTACTCGCGCGATCCATTGCCGTCCCAGATGTGGA 4791 Query 146162 CGCCCCTC-GCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCT 146220 | || || | | | || | | |||| || ||||||||||| || ||||| Sbjct 4790 TATCTTTCTGCTGCAACGTGTCTGCACT-CGTGTCGCCACTGATGAACCACAGTAGCTCC 4732 Query 146221 TCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAA 146267 ||| || || | |||||||||||||||||| |||||||| || || Sbjct 4731 TCGGCCACACCTCGCCAGAAGACCCTCTTGGTCGTCAGCAGTGGAAA 4685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589961978430680