Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq7195 129 5e-25 seq5421 120 3e-22 seq7887 104 2e-17 seq9710 87.8 2e-12 >seq7195 Length=47515 Score = 129 bits (142), Expect = 5e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | ||| |||||||| || ||||| ||||| | Sbjct 44583 CCACCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 44524 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||||||||| || || || | || || | ||||||||| || Sbjct 44523 AGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 44464 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||||||| ||||| | | ||| | || |||||| Sbjct 44463 ATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACG 44404 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAAT 21182 |||| |||||| |||||||| || || || ||||| || || ||||| |||||| Sbjct 44403 TCCAGGGTAATCGTCTTGCCCGTCAAAGTCTTGACGAAAATCTGCATCTTGAAT 44350 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || ||||| | || |||| || | ||| |||||||| || ||||| ||||| Sbjct 44815 GTTTCCGCCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTC 44756 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 ||| || | ||||||||||||| || || || | || || | ||||||||| Sbjct 44755 GCTCAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGG 44696 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | |||||||||||| ||||||||| ||||| | | ||| | || ||||| Sbjct 44695 CGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTC 44636 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | |||| |||||| |||||||| || || || ||||| || || ||||| Sbjct 44635 CACGTCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 44585 >seq5421 Length=2020 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || || || | |||||||| |||| ||||||||||| || ||||| ||||| Sbjct 1373 GTTTCCGCCGCGAAGACGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 1314 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 ||| || || | ||||| ||||| ||||| || | ||||| | ||||||||| Sbjct 1313 GCTCAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGG 1254 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | |||||||||||| ||||| || ||||| | | ||| | || ||||| Sbjct 1253 CGGGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTC 1194 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | || | || || |||||||| || | ||| || ||||| || ||||| Sbjct 1193 CACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 1143 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| ||||||||||| || ||||| ||||| | Sbjct 1141 CCACCACGCAGACGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTC 1082 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| ||||| ||||| || | ||||| | ||||||||| || Sbjct 1081 AGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCGGG 1022 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||| || ||||| | | ||| | || |||||| Sbjct 1021 ATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 962 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || |||||||| |||| ||| || || || || ||||| Sbjct 961 TCGAGCGTGATCGTCTTGCCCGTTAGCGTCTTCACGAAGATCTGCAT 915 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| |||| || |||||||| || ||||| || || | Sbjct 913 CCACCACGCAGACGCAGTACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAATCACTC 854 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| ||||| ||||| || |||| || | ||||||||| || Sbjct 853 AGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 794 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||| || ||||| | | ||| | || |||||| Sbjct 793 ATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 734 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | || || |||||||| |||| ||| || || || || ||||| || Sbjct 733 TCGAGCGTGATCGTCTTGCCCGTTAGCGTCTTCACGAAAATCTGCATCTT 684 >seq7887 Length=10481 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||| | |||| || |||||||| || ||||| ||||||| | Sbjct 1225 CCACCACGCAGACGCAGCACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 1166 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| ||||| ||||| || | || || | ||||||||| || Sbjct 1165 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 1106 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| || || || || | | | | | || |||||| Sbjct 1105 ATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACG 1046 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | || ||||||||||| || | || ||||| || || |||||||| Sbjct 1045 TCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 996 >seq9710 Length=10376 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 ||||||| ||||| ||||||| || || || ||||||| ||||| ||||| || | | Sbjct 864 CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 923 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | || | ||||||||| || | || |||||||| ||| || || || || | | Sbjct 924 TCAGACGCTGCTGGTCAGGCGGGATTCCYTCCTTGTCCTGGATTTTCTGCTTGACATTGT 983 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 | | | || |||||| |||| || ||||||||||| || || || || |||| Sbjct 984 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 1043 Query 21166 ATATTTGCAT 21175 | || ||||| Sbjct 1044 AGATCTGCAT 1053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422179087796972