Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5234 313 3e-80 seq6779 250 3e-61 seq7887 161 1e-34 seq5421 145 8e-30 seq7195 125 7e-24 seq9710 120 3e-22 seq13260 93.3 4e-14 >seq5234 Length=8456 Score = 313 bits (346), Expect = 3e-80 Identities = 588/850 (69%), Gaps = 22/850 (3%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 ||||| ||| ||| ||||| | ||||| || || | | || |||||| |||||| Sbjct 4909 GAGAATCCCAACCGCTTCGTTCTCTTCCCTATCCAGGAGCACGAAGTGTGGCAGATGTAC 4968 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG-TCCAAGGACACGAG 116709 || ||||||||||| || |||||||| | |||||| | |||||| | || | | | || Sbjct 4969 AAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATCGACCTGGTGCACGACCTCAAG 5028 Query 116710 CGACTGGGAGC--GCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 || ||| | | |||| | |||||||||||||| ||||||||||||||||| ||||| Sbjct 5029 -GATTGG-ACCAAGCTT-ACGGACAACGAGCGCCACTTCATCAAGCACGTGCTCGCCTTC 5085 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 ||||| ||||||||||| ||||| |||||||| ||| | | ||| | | || ||| Sbjct 5086 TTCGCAGCCAGCGACGGAATCGTGAACGAGAACTTGGCCATGAACTTCAGTAATGAAGTG 5145 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 |||||| | ||||| || ||||||||||| || ||||||||||| |||||| | |||||| Sbjct 5146 CAGGTGCCTGAGGCTCGATGCTTCTACGGATTCCAGATCGCCATCGAGAACATCCACTCG 5205 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTG 116947 || | || || ||||| ||||||||| | | || |||||| | | || Sbjct 5206 GAGGTCTACTCACTGCTCATTGACACGTACATCAAGGATGCGATCGAGAAGGATCATCTG 5265 Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 ||| || || ||||| || |||||||||| |||| || | |||||||| ||| Sbjct 5266 TTGCGTGCGATTGAGACCATTCCGTGCGTCACGAAGAAAGCACACTGGGCGCTCAAGTGG 5325 Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 || | | | | || ||| | ||||| || |||| || || ||||| |||||| Sbjct 5326 TGCGACCCTCGTGTGTCCTCCTACCCGGAGCGTCTACTGGCTTTTGCTGCCGTTGAGGGC 5385 Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127 ||||||| ||||| ||| | |||| || ||||| ||||| || ||||||||||| Sbjct 5386 ATCTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTTAAGAAGCGTGGCCTCATGCCT 5445 Query 117128 GGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCC 117187 || || | ||| |||||||||||| | ||||||||| |||| ||||| ||| Sbjct 5446 GGACTCAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGTATGCACACGGACTTCGCC 5505 Query 117188 TGTTTGCTG---TTCAAGCATTTGGT---GCAGCGACCGAGCGCGGCGCGCGTCAGGGAG 117241 || | ||| | ||||| |||| ||| ||| | | | |||| | || ||| Sbjct 5506 TGCCTCCTGTACTCCAAGC---TGGTCACTAAGCTGCCG-GAGAGCCGCGTG-CA-CGAG 5559 Query 117242 ATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGT 117301 ||| | |||||||| | || ||||| ||| | || ||||||||||| Sbjct 5560 ATCATTCGTGACGCGGTGGTGATTGAGCACGAGTTCGTGCGTGACTCGCTGCCGGTGGAG 5619 Query 117302 CTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTG 117361 ||| | || | || | | |||| || ||||| |||||||| || ||| | ||| Sbjct 5620 CTGATTGGCATGAACTCGGGCCTCATGTGCCAGTACATTGAGTTCGTTGCTGACCGTCTG 5679 Query 117362 CTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC--CAACCCGCTGGACTTTATGA 117419 ||| | ||| | | ||||| |||| |||||| ||||| | |||| ||| Sbjct 5680 CTGTACTCGCTTGGTGTGTCCAAGATCTAC--CACGCCAAGAACCCTTTCGACTGGATGG 5737 Query 117420 ACCTCATCTC 117429 || | ||||| Sbjct 5738 ACATGATCTC 5747 >seq6779 Length=4860 Score = 250 bits (276), Expect = 3e-61 Identities = 399/566 (70%), Gaps = 8/566 (1%) Strand=Plus/Minus Query 116593 GAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAA 116652 ||| ||| ||| |||||| | |||||||| || | | ||| |||||| |||||||| Sbjct 1261 GAATCCCAACCGCTTCGTGCTCTTCCCCATTCAGGAGCACGACGTGTGGCAGATGTACAA 1202 Query 116653 AAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG-TCCAAGGACACGAGCG 116711 ||||| ||||| || |||||||| | ||||||| |||| ||| | || | | | | || Sbjct 1201 GAAGGCGGAGGCCTCCTTCTGGACGGCCGAGGAGCTGGAYCTGGTGCACGATCTCAA-CG 1143 Query 116712 ACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCG 116771 |||||| | | ||||||||||| || ||||||||| |||| ||||| || |||| Sbjct 1142 ACTGGGCAAAACTCACAGACAACGAGCGTCACTTCATCAAGTACGTTCTGGCGTTCTTCG 1083 Query 116772 CCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGG 116831 | || || ||||| |||||||||||||| |||| | | ||| | | || |||||| Sbjct 1082 CTGCTAGTGACGGTATCGTCAACGAGAACCTGGCCATGAACTTCAGTAATGAAGTGCAGA 1023 Query 116832 TGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAA 116891 | | || || || |||||||||||||| |||||||| || ||||| | |||||||| Sbjct 1022 TACCGGAAGCTCGCTGCTTCTACGGCTTCCAGATCGCTATCGAGAATATCCACTCGGAGG 963 Query 116892 TGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGA 116951 |||||||| || || ||||| ||| | | | |||||| || ||| | Sbjct 962 TGTATTCGCTGCTTATTGACACATACATCAAGGACGCCGTGGAGAAAGACCACTTGCTAC 903 Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG-ATC 117010 || |||||||| || || || ||| | |||||||| | |||||||| ||| | Sbjct 902 GTGCTATCGAGACTATCCCATGTGTCCAGAAGAAGGCCAACTGGGCGCTAAAATGGTGTG 843 Query 117011 GCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTC 117070 || || | | | | | | || ||||| ||| | || ||||| || || || || || Sbjct 842 ACCCGC-GTGTGTCGTCGTACGCAGAGCGTCTGCTAGCGTTCGCTGCAGTGGAAGGTATC 784 Query 117071 TTCTTTTCGGG--CAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCG 117128 ||||||||||| || ||| || | || ||||| ||||| ||||| || ||||| | Sbjct 783 TTCTTTTCGGGGTCATTTT--GTTCCGTTTTCTGGCTTAAGAAGCGCGGTCTTATGCCTG 726 Query 117129 GCCTGACTTTCAGCAACGAGCTCATC 117154 | |||| ||| |||||| | ||| Sbjct 725 GTCTGAGCTTCTCAAACGAGATGATC 700 >seq7887 Length=10481 Score = 161 bits (178), Expect = 1e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || || |||||||| |||||||| ||||||| || | Sbjct 996 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCG 1055 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||||| | | | ||||| | ||||| | ||||| ||||||||||| | ||| Sbjct 1056 TCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGAC 1115 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| ||||| || |||| ||||| || |||||| Sbjct 1116 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTAC 1175 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 ||||||||||||||| | || ||||| || ||| |||| || | || || ||| Sbjct 1176 AACATCCAGAAGGAGTCGACCCTGCACCTTGTGCTGCGTCTGCGTGGTGGTGGC 1229 >seq5421 Length=2020 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| |||||||| || ||||| ||||||| || | | Sbjct 915 ATGCAGATCTTCGTGAAGACGCTAACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 974 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| ||||| || |||||||| | ||||| Sbjct 975 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCGCCTGACCA 1033 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || || | ||||| || | ||||||||| Sbjct 1034 GCAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACGCTGAGCGACTACAA 1093 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||||||||| || ||| | || || | || ||| Sbjct 1094 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGTCTGCGTGGTGGC 1142 Score = 140 bits (154), Expect = 3e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| |||||||| || ||||| ||||||| || | | Sbjct 1143 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 1202 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| ||||| || |||||||| | ||||| Sbjct 1203 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCGCCTGACCA 1261 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || || | ||||| || | ||||||||| Sbjct 1262 GCAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACGCTGAGCGACTACAA 1321 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||| |||||||||| || ||| Sbjct 1322 CATCCAGAAGGAGTCCACGCTGCACCTGGTG 1352 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || ||||| |||||||| || ||||| ||||||| || | Sbjct 684 AAGATGCAGATTTTCGTGAAGACGCTAACGGGCAAGACGATCACGCTCGACGTGGAGCCG 743 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| | ||| | || |||| ||||| || |||||||| | || Sbjct 744 TCGGACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCGCCTGA 802 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || || | ||| ||||| ||||| || || | ||||| || | || || Sbjct 803 CCAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACACTGAGTGATTA 862 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | |||||||| || || |||| || | || ||| Sbjct 863 CAACATCCAGAAGGAGTCTACGCTGCACCTGGTACTGCGTCTGCGTGGTGGC 914 >seq7195 Length=47515 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| || || ||| | ||||| || | | Sbjct 44585 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAGACGATTACCCTGGACGTGGAGCCTTCG 44644 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| |||| || | ||||| || |||||||| | ||||| Sbjct 44645 GACTCGATCGACAACG-TGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCA 44703 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || |||||||| |||| ||||| || | ||||||||| Sbjct 44704 GCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 44763 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || || || || || |||| || | ||||| Sbjct 44764 CATCCAGAAGGAGTCTACTCTTCACCTGGTTCTGCGTCTGCGTGGCGG 44811 Score = 123 bits (136), Expect = 3e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || | |||||||| || || ||| | ||||| || | Sbjct 44354 AAGATGCAGATTTTCGTCAAGACTTTGACGGGCAAGACGATTACCCTGGACGTGGAGCCT 44413 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| | ||| |||| || | ||||| || |||||||| | || Sbjct 44414 TCGGACTCGATCGACAACG-TGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGA 44472 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| || || |||||||| |||| ||||| || | |||||| Sbjct 44473 CCAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTA 44532 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | || || || || || |||| || | || ||| Sbjct 44533 CAACATCCAGAAGGAGTCTACTCTTCACCTGGTTCTGCGTCTGCGTGGTGGC 44584 >seq9710 Length=10376 Score = 120 bits (132), Expect = 3e-22 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | |||||||| |||||||| | ||||| || | || Sbjct 1053 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 994 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| || || ||||| | |||||| Sbjct 993 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGARGGAATCCCGCCTGACCAG 934 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 933 CAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTCTCGGACTACAAC 874 Query 40870 ATCCAGAAGG 40879 ||||| |||| Sbjct 873 ATCCAAAAGG 864 >seq13260 Length=2999 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 40789 GAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848 || |||||||| | |||||||| || || || | ||| ||||| ||||| || || | Sbjct 1 GAAGGCATCCCGCCTGACCAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGC 60 Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| || | ||||||||||||||||||||| | |||||||| || || |||| Sbjct 61 CGCACGCTGAGTGACTACAACATCCAGAAGGAGTCTACGCTGCACCTGGTACTGCG 116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515118944783920