Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq7195 138 1e-27 seq5421 129 5e-25 seq7887 118 9e-22 seq10576 93.3 4e-14 seq9710 86.0 5e-12 >seq7195 Length=47515 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | |||||||| || || |||||||| ||||||| ||||| ||||| Sbjct 44565 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCC 44506 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| ||||||||||| || || || ||||| |||||||| Sbjct 44505 AGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 44446 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||||| || || | |||| | ||||| ||| || || | ||| | ||| ||| Sbjct 44445 ATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGGGTAATCGTCTTG 44386 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| || || ||||||||||| Sbjct 44385 CCCGTCAAAGTCTTGACGAAAATCTGCAT 44357 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | |||||||| || || |||||||| ||||||| ||||| ||||| Sbjct 44793 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCC 44734 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| ||||||||||| || || || ||||| |||||||| Sbjct 44733 AGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 44674 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||||| || || | |||| | ||||| ||| || || | ||| | ||| ||| Sbjct 44673 ATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGGGTAATCGTCTTG 44614 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| || || || || ||||||||| Sbjct 44613 CCCGTCAAGGTCTTGACGAAGATCTGCATG 44584 >seq5421 Length=2020 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | |||||||| || || ||||||||||| |||| ||||| |||||| Sbjct 895 ACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAATCACTCAGTGTGCGGCCATCCTCA 836 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| | || || |||||||| || || || ||||| |||||||| | Sbjct 835 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGA 776 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || || | |||| | ||||| ||| || |||| || | ||| ||| Sbjct 775 ATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTG 716 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||||||||| Sbjct 715 CCCGTTAGCGTCTTCACGAAAATCTGCAT 687 >seq7887 Length=10481 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| | ||| | || ||||| || || |||||||| || || |||||| || Sbjct 1211 CAGCACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTC 1152 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || || ||| |||| ||||||||||| || || || |||||||||||||| Sbjct 1151 CTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 1092 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||||| || || || | || | | |||||| ||| || |||| || | || Sbjct 1091 CTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGT 1032 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || ||||||||||| Sbjct 1031 CTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 999 >seq10576 Length=3682 Score = 93.3 bits (102), Expect = 4e-14 Identities = 297/461 (64%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 132917 GCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGA 132976 ||||| || |||||||| || || ||| |||| ||| ||||| ||||| ||| || Sbjct 507 GCGCATGTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATGGACGT 566 Query 132977 CACCACCGAGTAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAA 133036 | | ||| || || |||| | ||||| || |||||||| ||| | Sbjct 567 GAGTTTGCTGATAGTCGGGTCAGCGATGTGGATGTTCAGAGACTGACTCTGGCAGATGTA 626 Query 133037 AGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCTT 133096 || ||||||| || | || | | | ||| |||||||||||| | || || Sbjct 627 AGCGCCACGGTCAGCCGACAGATCCAGCACGGCCTTCTGTTTGATCTCCCACACAGTTTT 686 Query 133097 GAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGC 133156 | | | |||||| || | ||| || | | | |||||||| || || || Sbjct 687 GTACTTGTCCTTGACGTGGTCTGGAATGGCCTTGACCTTCTGCACAGATCCACCGTCATT 746 Query 133157 CAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGAG 133216 | ||||| || || | ||| || || | || | || || || ||| | || | || Sbjct 747 TAGAATCTGATTACGTACTTCTGGTGTCCAGATTCCCAGCTCAATAAGCTCCTTCATCAG 806 Query 133217 ATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGT 133276 |||| |||||| | |||||||||||| || || || | | || | || ||||| Sbjct 807 GTACTTGTTGACGATCGTAAACTCGCCGGCCAGCACACGGCGGTTGTACATGTTGGACGT 866 Query 133277 GAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTA 133336 | | || |||| || || |||||||| || ||||| || || | |||||| ||||| Sbjct 867 GTAAGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCTGTGGACGCCGTCGGCATCGG 926 Query 133337 CGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGT 133377 || |||| || ||||| | | ||||| ||| ||| || Sbjct 927 TGCAACCAGCAGTGAGTTGCGAAGACCGTATTTGATTACGT 967 >seq9710 Length=10376 Score = 86.0 bits (94), Expect = 5e-12 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 ||||| |||||||| || | ||||| ||||| ||||| || || ||| |||| Sbjct 866 TTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATC 925 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 ||||||||||| || || || || || |||||||| ||||| || || || | || Sbjct 926 AGACGCTGCTGGTCAGGCGGGATTCCYTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 985 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | | |||| | ||| || || | || | || ||||| |||| || || ||||| Sbjct 986 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAG 1045 Query 118731 ATCTGCATG 118739 ||||||||| Sbjct 1046 ATCTGCATG 1054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433748092476364