Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq7887 141 1e-28 seq5421 129 7e-25 seq9710 123 3e-23 seq7195 107 2e-18 >seq7887 Length=10481 Score = 141 bits (156), Expect = 1e-28 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||| | |||| || |||||| || || ||||| || | |||||| || | Sbjct 1214 ACGCAGCACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCC 1155 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| || || ||||||||||| | ||| | || |||||| Sbjct 1154 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 1095 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCGACCGTGA 43146 |||| |||||| || |||| | | | || | |||| || ||||| |||| ||||| Sbjct 1094 GTCCTGGATTTTCTGCTTGA-CATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGA 1036 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 |||| |||||||| || ||||| || || || |||||||| Sbjct 1035 TGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 996 >seq5421 Length=2020 Score = 129 bits (142), Expect = 7e-25 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||| |||| || |||||| || || ||||||||| ||| || || | Sbjct 902 ACGCAGTACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAATCACTCAGTGTGCGGCC 843 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| || || ||||||||||| | ||| | || ||||| Sbjct 842 ATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTT 783 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| || || || || | ||| | | | || ||| || ||||| |||| ||||| Sbjct 782 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 724 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 | || ||||||||||||||||| || || || ||||| || Sbjct 723 TCGTCTTGCCCGTTAGCGTCTTCACGAAAATCTGCATCTT 684 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| |||| ||| |||||| || || ||||| || ||| || || | Sbjct 1130 ACGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 1071 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| || || ||||||||||| | ||| | || ||||| Sbjct 1070 ATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTT 1011 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| || || || || | ||| | | | || ||| || ||||| |||| ||||| Sbjct 1010 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 952 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || ||||||||||||||||| || ||||| ||||| Sbjct 951 TCGTCTTGCCCGTTAGCGTCTTCACGAAGATCTGCAT 915 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| |||| ||| |||||| || || ||||| || ||| || || | Sbjct 1358 ACGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 1299 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| || || ||||||||||| | ||| | || ||||| Sbjct 1298 ATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTT 1239 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| || || || || | ||| | | | || ||| || ||||| |||| ||||| Sbjct 1238 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 1180 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||||||| |||||||| |||||||| ||||| Sbjct 1179 TCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 1143 >seq9710 Length=10376 Score = 123 bits (136), Expect = 3e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 ||||||| || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 864 CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 923 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || ||||||||||| | ||| | | ||||||||| |||||| || |||| | | | Sbjct 924 TCAGACGCTGCTGGTCAGGCGGGATTCCYTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 982 Query 43114 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 || | ||||| || ||||| || | ||||||||| |||||||| | ||||| ||| Sbjct 983 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 1042 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 1043 AAGATCTGCAT 1053 >seq7195 Length=47515 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| || || |||| || ||||||||||||||||| Sbjct 44776 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAA 44717 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | ||| | || ||||||||| ||| ||||| || | ||| Sbjct 44716 GATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTCA-CGT 44658 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| | ||||| || | || || || |||||||| | ||||| | Sbjct 44657 TGTCGATCGAGTCCGAAGGCTCCACGTCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTGA 44598 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 44597 CGAAGATCTGCAT 44585 Score = 104 bits (114), Expect = 3e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| || || |||| || ||||||||||||||||| Sbjct 44548 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAA 44489 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | ||| | || ||||||||| ||| ||||| || | ||| Sbjct 44488 GATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTCA-CGT 44430 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| | ||||| || | || || || |||||||| | ||||| | Sbjct 44429 TGTCGATCGAGTCCGAAGGCTCCACGTCCAGGGTAATCGTCTTGCCCGTCAAAGTCTTGA 44370 Query 43171 CAAAGATTTGCATTTT 43186 | || || ||||| || Sbjct 44369 CGAAAATCTGCATCTT 44354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571706331442760