Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq10576 118 2e-21 seq5234 93.3 9e-14 >seq10576 Length=3682 Score = 118 bits (130), Expect = 2e-21 Identities = 643/1027 (63%), Gaps = 46/1027 (4%) Strand=Plus/Minus Query 248417 CCATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGG 248476 ||||||| || |||||| ||||| || | || |||| |||||||| || ||| Sbjct 2728 CCATGTATGTCCTCAAGCGCGACGGCCGTAGCGAGGACGTCAAGTTCGACAAGATTACGG 2669 Query 248477 CGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCG 248536 ||||||||| |||||||| || || || | || | | ||| ||| || ||| Sbjct 2668 CGCGCATCACCAAGCTCTGCTACGGACTTAACCCGGATTACGTAGATGCCGTCAAGATCT 2609 Query 248537 CCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAG 248596 | ||||| || | | ||||| ||| |||| || || ||| | || |||||| | | Sbjct 2608 CGCAGAAGGTCGTGGCCGGCGTGTACCCCGGGGTCACCACGTCCGAGCTGGACGAGCTGG 2549 Query 248597 CTGCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGACTACTCGCTGCTGGCCGGG 248655 | || |||||||| |||||| | | ||| ||||| |||| ||| |||||| | | Sbjct 2548 CCGCCGAGACGGCCGCGTAC-CAGAGCACGCAGCACCCGGACTTCTCCAAGCTGGCGGCG 2490 Query 248656 AGGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGGCT 248715 | |||||||| || | || ||||| | ||||| || ||| || | ||| | Sbjct 2489 CGTATCGCCGTGTCCAACCTGCACAAGAACACGAACAAGGTCTTCAGTGACAACATCGAG 2430 Query 248716 G--------------ACCTAC---ATGCCTATGG----------GATGGTCGCCGATGAC 248748 | ||| || | | | || | | |||| |||||| Sbjct 2429 GTGTTCCACAATAACACCCACGAGAAGACAGGGGCAGCTGCGCCGCTCATCGCTGATGAC 2370 Query 248749 GT---CCACACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGC 248805 || | | | || || || |||| | || || || || || | ||| | Sbjct 2369 GTATACGAGATAGTGATGCAACACAA---GGACGAGCTCAACTCGGCCATCATCCACGAC 2313 Query 248806 AAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAA 248865 || || |||||||| | ||||| ||||| ||||| ||| | || ||| || Sbjct 2312 CGCGACTTCGAGTACGACTACTTTGGCTTCAAGACGCTCGAGCGAGGCTACCTCTTCCGC 2253 Query 248866 ATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATT 248925 | ||||||| | ||||| || ||||| ||| | |||| ||||| | || || Sbjct 2252 GTGAATGGCAAAGTGGTGGAGCGGCCGCAGCAGATGATTCTGCGCGTGGCGCTGGGCATC 2193 Query 248926 CACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATG 248985 |||||| ||||| || || ||||||||||||| ||| || | | Sbjct 2192 CACAAGAGCGACATCCAGGCCGCGCTCGAGACGTACGAGCTCATGTCGCAAAAGTTCTTC 2133 Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGCTC 249041 || || || || || || |||||||||||||| || |||| ||||||| || Sbjct 2132 ACGCACGCGACCCCTACTCTCTTCAACGCCGGCACGCCACGTC----CTCAGCTGTCTTC 2077 Query 249042 GTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACA 249101 || || || | || ||||| || ||||| |||| ||||| || |||||||| || || Sbjct 2076 TTGTTTCCTATTGGCAATGCAGGATGACTCGATCGAGGGCATCTACGACACGCTCAAGCA 2017 Query 249102 GACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGC 249161 ||| || || || | ||||| || || || || | |||||||||||| Sbjct 2016 ATGCGCGTGCATATCCAAGTGGGCGGGAGGTATTGGCATCAGTATGCACAACATCCGAGC 1957 Query 249162 GAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCG 249221 | |||||| || || ||||| | |||| || | ||| | || || Sbjct 1956 CACCAACAGCTACATCCGCGGCACGAATGGCTCCTCCAATGGCATTATCCCCATGCTGCG 1897 Query 249222 ATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCG---CCGAAAGGGGTCGTT 249278 ||| | ||| || | | | |||||| ||| | || || || || || Sbjct 1896 TGTGTTTAACGACACGGCTCGCTATGTGGACCAGGGCGGAGGTAAGCGCAAAGGATCCTT 1837 Query 249279 CGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAA 249338 || || |||||||| |||||||| || | || ||||||||||| || ||||| Sbjct 1836 TGCTATCTATTTGGAGCCATGGCACGCAGACGTGTTCGAGTTCCTGGATCTGCGCAAGAA 1777 Query 249339 CAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTT 249398 | ||||||||||||| | || |||||| | ||||||| || ||||| | || | Sbjct 1776 CCACGGCAACGAGCTGCACCGCGCTCGTGACTTGTTCTACGCGCTCTGGGTGCCTGATCT 1717 Query 249399 GTTCATG 249405 |||||| Sbjct 1716 CTTCATG 1710 >seq5234 Length=8456 Score = 93.3 bits (102), Expect = 9e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | ||||| || ||||||||||| ||||||||| Sbjct 5807 ACGCCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGA 5748 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTT 157332 || |||||||||||||| ||||| ||||| Sbjct 5747 GAGATCATGTCCATCCAGTCGAAAGGGTT 5719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073552234942656