Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq12351 122 2e-22 seq10576 98.7 2e-15 >seq12351 Length=7116 Score = 122 bits (134), Expect = 2e-22 Identities = 418/636 (66%), Gaps = 18/636 (3%) Strand=Plus/Plus Query 35159 ACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGAC 35218 || ||||| || || || || | |||||| | || |||| ||| || || || | Sbjct 4622 ACCGGAACGGGTACGCTGTCGGTGTTTGGAGCGCAGATGACGTTTAGCCTGAGAAACAAT 4681 Query 35219 ACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCG 35278 ||||| | || || ||||||| | |||||| |||| || | || || || | Sbjct 4682 GTCTTTCCACTGCTGACGACCAAGAGGGTCTTCTGGCGAGGTGTGGCCGAGGAGCTACTG 4741 Query 35279 TGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAG-AAGATA--CACATC 35335 ||||||||||| ||| | || || || | | | || || || |||||| |||||| Sbjct 4742 TGGTTCATCAGTGGCGACAC-GAGTGCAGACACGTTGC--AGCAGAAAGATATCCACATC 4798 Query 35336 TGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAG 35395 ||| ||| ||||| ||||| || | ||||| ||| |||| | || | | || Sbjct 4799 TGGGACGGCAATGGATCGCGCGAGTACTTGGATAGTCGAGGACTGCCGAATCGGGAAGTT 4858 Query 35396 GGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA-TGATAC 35454 || || | ||||| || ||||| ||||| |||||||| |||||||| | || || Sbjct 4859 GGGGACCTTGGACCGGTTTACGGCTTCCAGTGGCGTCACTTTGGTGCCAAGTACACGGAC 4918 Query 35455 CTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCT 35514 || | | || || ||||| | || | || ||| | || | | | | | || Sbjct 4919 ATG-CATGCGGACTACACTGGCCAAGGGGTGGACCAACTTGCGGAGGTGATTCACAAGCT 4977 Query 35515 GAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCA 35574 | | ||||| ||| || |||| | || |||| ||||| || ||||| | Sbjct 4978 GCGTACGAATCCGACTGACCGACGGATTGTCCTGTCGGCGTGGAACCCGGCTGATCTCAA 5037 Query 35575 CCTTATGGCTCTTCCTCCATGCCACATG-ACTGCTCAATTTTATGTGGCTAATGGAGAAT 35633 | ||||| || || || ||||||||| |||| || || || ||||| | || |||| Sbjct 5038 CGAGATGGCACTGCCACCTTGCCACATGTTCTGC-CAGTTCTACGTGGCCGACGGGGAAT 5096 Query 35634 TGTCGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATAT 35691 | ||||||||| |||| ||||| || || ||| || | |||||||| ||||| || Sbjct 5097 TATCGTGCCAGATGTACCAGCGTTCGGCCGACATG--GGACTTGGCGTGCCATTCAACAT 5154 Query 35692 TGCATCATACTCTCTTCTGACTCATC-TGATG-GCCAGTATGGTGGGTCTAAAACCGGGA 35749 || ||| | || ||||| | | || || || || || || || ||||| || Sbjct 5155 CGCCAGCTACGCGCTGCTGACGCGGCTTGTTGCGCAAG--TGACTGGACTGAAACCTGGC 5212 Query 35750 GAGTTTATCCTCACTCTTGGTGACGCACACATTTAT 35785 ||||| |||| | | | |||||||| ||| | ||| Sbjct 5213 GAGTTCATCCACGTTATCGGTGACGCGCACGTGTAT 5248 >seq10576 Length=3682 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 93604 CGATTATACATGTTGGACGTTAAAGGCTCAAAGGATTCAGAGTTGCCCAGGATCTGTGCA 93663 || || |||||||||||||| ||||||| | ||| ||| ||||||||||||||| || Sbjct 847 CGGTTGTACATGTTGGACGTGTAAGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCT 906 Query 93664 GTGGATGCAGTAGGCATGGGAGCAACAAACATTGAATTGTGAACACCATACTTCATAATG 93723 ||||| || || ||||| || ||||| | || ||| ||| ||| ||| || || || | | Sbjct 907 GTGGACGCCGTCGGCATCGGTGCAACCAGCAGTGAGTTGCGAAGACCGTATTTGATTACG 966 Query 93724 TC 93725 || Sbjct 967 TC 968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989386625306485