Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5234 172 7e-38 seq6779 165 1e-35 seq10576 93.3 5e-14 >seq5234 Length=8456 Score = 172 bits (190), Expect = 7e-38 Identities = 402/601 (67%), Gaps = 13/601 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| || ||||| ||||||||| | ||| || | ||||| || || ||||| Sbjct 5507 CAGGCGAAGTCCGTGTGCATACCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGT 5448 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| ||||||||||| |||||||| || ||||| ||| || || || |||||| Sbjct 5447 CCAGGCATGAGGCCACGCTTCTTAAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAG 5388 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-----CGCTG-TCA 33755 || || || || |||||||| || | || | ||| || || || | || Sbjct 5387 ATGCCCTCAACGGCAGCAAAAGCCAGTAGACGCTCCGGGTAGGAGGACACACGAGGGTC- 5329 Query 33756 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 | | |||||| | ||||| | || ||||| | || || || || || || || ||| Sbjct 5328 -GCA-CCACTTGAGCGCCCAGTGTGCTTTCTTCGTGACGCACGGAATGGTCTCAATCGCA 5271 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 || |||| | || || | ||| || | || || || || | || || Sbjct 5270 CGCAACAGATGATCCTTCTCGATCGCATCCTTGATGTACGTGTCAATGAGCAGTGAGTAG 5211 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 | ||||| || ||||| || ||||| ||||| ||||||||||| |||| |||||| | Sbjct 5210 ACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAATCCGTAGAAGCATCGAGCCTCAGGC 5151 Query 33936 ATCTGCACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCATCACTGG 33993 | ||||||||| ||| || |||| || || || || ||||| ||||| || |||| Sbjct 5150 ACCTGCACTTCATTACTGAA--GTTCATGGCCAAGTTCTCGTTCACGATTCCGTCGCTGG 5093 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 34053 |||| || || || | || || || || || | |||| || || || ||| Sbjct 5092 CTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTAAGCTTGGTCC 5033 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 |||| |||| || | | || | || || | ||||| || || ||||| |||| Sbjct 5032 AATCCTTGAGGTCGTGCACCAGGTCGATCTCCTCAGCAGTCCAGAAGGAGGCCTCGGCCT 4973 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 34173 | || ||||| | ||| | || || | ||||| ||||| | ||| || | || |||| Sbjct 4972 TCTTGTACATCTGCCACACTTCGTGCTCCTGGATAGGGAAGAGAACGAAGCGGTTGGGAT 4913 Query 34174 T 34174 | Sbjct 4912 T 4912 >seq6779 Length=4860 Score = 165 bits (182), Expect = 1e-35 Identities = 410/619 (66%), Gaps = 13/619 (2%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 |||| || || |||||||| ||||| ||||| || | ||| || | ||||| || | Sbjct 657 ACATTAAGCACGCGAAATCCGTGTGCATGCCCTCATCACGACTGATCATCTCGTTTGAGA 716 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | | || || ||||| || || ||||| |||||||| || | |||| ||||| || | Sbjct 717 AGCTCAGACCAGGCATAAGACCGCGCTTCTTAAGCCAGAAAACGGAACAAAATGACCCCG 776 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-----ACCGGC 33748 |||||||||| ||||| |||||||| || || | || | |||| | || || | Sbjct 777 AAAAGAAGATACCTTCCACTGCAGCGAACGCTAGCAGACGCTCTGCGTACGACGACACAC 836 Query 33749 GC-TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33807 || |||| ||| ||| | ||||| | ||||||||| | ||||| || || || | Sbjct 837 GCGGGTCA---CACCATTTTAGCGCCCAGTTGGCCTTCTTCTGGACACATGGGATAGTCT 893 Query 33808 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33867 | || ||| | | | || ||| || || || | || || || || | | Sbjct 894 CGATAGCACGTAGCAAGTGGTCTTTCTCCACGGCGTCCTTGATGTATGTGTCAATAAGCA 953 Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927 | ||||| ||||| || || || || || || ||||| || |||||||| || | || Sbjct 954 GCGAATACACCTCCGAGTGGATATTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGAG 1013 Query 33928 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCC 33985 | || | ||||||||||| ||| || |||| || | || || || || || || Sbjct 1014 CTTCCGGTATCTGCACTTCATTACTGAA--GTTCATGGCCAGGTTCTCGTTGACGATACC 1071 Query 33986 ATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 34045 ||||| || || || ||||||| || | || || || | |||| ||| || Sbjct 1072 GTCACTAGCAGCGAAGAACGCCAGAACGTACTTGATGAAGTGACGCTCGTTGTCTGTGAG 1131 Query 34046 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 34105 ||| ||| || |||| ||| | | |||| || || | ||||| || || || Sbjct 1132 TTTTGCCCAGTCGTTGAGATCGTGCACCAGRTCCAGCTCCTCGGCCGTCCAGAAGGAGGC 1191 Query 34106 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 34165 ||| ||||| || ||||| | ||| | ||| || | || || ||||| | || || | Sbjct 1192 CTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGAATGGGGAAGAGCACGAAGCG 1251 Query 34166 ATTTGGATTTGGTGCAAGG 34184 || ||||| || ||||| Sbjct 1252 GTTGGGATTCGGGACAAGG 1270 >seq10576 Length=3682 Score = 93.3 bits (102), Expect = 5e-14 Identities = 789/1268 (62%), Gaps = 16/1268 (1%) Strand=Plus/Plus Query 62669 CGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTC 62728 || ||| | ||| |||| || || || || ||||| ||||| || || || |||| Sbjct 1104 CGTCTCCATTGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCACTAGCTTG 1163 Query 62729 CGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAAT 62788 | ||| || || | ||| || | ||| || ||||| || || | || || || ||||| Sbjct 1164 CTTGCTCTCGAACGCATAGTTCATGAGGATGAACGCATCAGCCAGACCCTGGACGCCAAT 1223 Query 62789 ACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAAT 62848 ||| || || | ||| | | | || || | ||| |||| | |||||| || || | Sbjct 1224 ACCAATGGGGCGATGACGCATGTTGGACTTCCGAGCCTCTGCTACAGGATAGTAGTTGAC 1283 Query 62849 ATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAA 62908 || || | || ||||| || | || || |||||||| || | |||||| | | Sbjct 1284 GTCAATGACCTTGTTGAGGTTGCGAGTGATCACCTTGACCACTTCATACAGTTTCTGGTA 1343 Query 62909 ATCAAAT-CGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGG 62967 || || ||||| || || ||| || || || ||||| |||| || ||||| | Sbjct 1344 GTCGAACACGCCC-TCGTCCACGAACTTGGGCAGCGCCACAGACGCCAAGTTGCACACTG 1402 Query 62968 CTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAG 63027 | ||||||| | || || | || | ||| ||| | || || | ||| | Sbjct 1403 CCACCTCATCGGGCGACGTGTACTCCATCACCTCGCAGCATAAGTTGCTGGAGCGGATCG 1462 Query 63028 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAG 63087 | || | || || || || ||| ||| || ||||| || || || || || Sbjct 1463 TGCCCAGGTTCTGCTGGTTCGACTTGCGGTTGGCTGCGTCCTTGTAGAGCATAAAGGGCA 1522 Query 63088 TACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATA 63146 || || || ||||| | || | || || ||| | | || | || || || | Sbjct 1523 CTCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGG-GCGTTAATGGTC 1581 Query 63147 GATTTGTATC---TCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCC 63203 || | | ||||| || | ||||| ||||| ||| |||||||||||| Sbjct 1582 --TTCCGAGCGCGTCCTTCCT-TCTCGTACTTTTCATACAGCGCTTCAAACTCGTCTCCC 1638 Query 63204 CAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCC 63263 || | || | | |||| ||| | ||||| | | ||||| || | || Sbjct 1639 CAGCACTCGTAGAGACCAGGAGCTTCGTTAGGACAGAATAGACTCCACTTACCATTGGCC 1698 Query 63264 TTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCT 63322 | ||||| ||||| ||||||||||| | ||| || || || || || || | | | Sbjct 1699 TCCACTCTCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAGAACAAG-TCACGAGCGCG 1757 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || |||||| || ||||| ||||| |||||| | | | || | ||||| Sbjct 1758 GTGCAGCTCGTTGCCGTGGTTCTTGCGCAGATCCAGGAACTCGAACACGTCTGCGTGCCA 1817 Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 63442 || ||||| || || || | ||| || || ||| ||||| || | || | Sbjct 1818 TGGCTCCAAATAGATAGCAAAGGATCCTTTGCGCTTACCTCCGCCCTGGTCCACATAGCG 1877 Query 63443 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACC 63502 ||| |||| ||| | || | || ||| || ||||| || || || ||||| || || Sbjct 1878 AGCCGTGTCGTTAAACACACGCAGCATGGGGATAATGCCATTGGAGGAGCCATTCGTGCC 1937 Query 63503 GGAGATATAGCCTCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCC 63560 | ||| |||| |||| || || | | | | |||| || || || || ||| Sbjct 1938 GCGGATGTAGCTGTTGGTGGCTCGGATGTTGTGCATACTGAT--GCCAATACCTCCCGCC 1995 Query 63561 ATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCG 63620 || || || | |||||| | || | |||||| |||||||| || || ||||| Sbjct 1996 CACTTGGATATGCACGCGCATTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCATCC 2055 Query 63621 ATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAG 63680 ||| | ||| ||||| ||||| || |||| | || || || || || | Sbjct 2056 TGCATTGCCAATAGGAAACAAGAAGACAGCTGAGGACGTGGCGTGCCGGCGTTGAAGAGA 2115 Query 63681 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAG 63740 ||||| | |||||||| || | |||| || | || | ||||||||| | || | Sbjct 2116 GTAGGGGTCGCGTGCGTGAAGAACTTTTGCGACATGAGCTCGTACGTCTCGAGCGCGGCC 2175 Query 63741 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63800 | || || | | || || || | || || |||| | ||| ||||| || | || Sbjct 2176 TGGATGTCGCTCTTGTGGATGCCCAGCGCCACGCGCAGAATCATCTGCTGCGGCCGCTCC 2235 Query 63801 ACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63860 || | |||| || | || | |||| | || | || || || ||||| ||| Sbjct 2236 ACCACTTTGCCATTCACGCGGAAGAGGTAGCCTCGCTCGAGCGTCTTGAAGCCAAAGTAG 2295 Query 63861 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTA 63920 | ||| ||||| || |||| || || |||| ||||||| ||||| | || | Sbjct 2296 TCGTACTCGAAGTCGCGGTCGTGGATGATGGCCGAGTTGAGCTCGTCCTTGTGTTGCATC 2355 Query 63921 ACTATATC 63928 ||||| || Sbjct 2356 ACTATCTC 2363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629695045367760