Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5234 158 2e-33 seq10576 98.7 1e-15 >seq5234 Length=8456 Score = 158 bits (174), Expect = 2e-33 Identities = 394/590 (67%), Gaps = 15/590 (3%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| || ||| | ||||||||| | ||| || | ||||| || || ||||| Sbjct 5507 CAGGCGAAGTCCGTGTGCATACCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGT 5448 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 || ||||| ||||||||||| |||||||| || ||||| ||| || || || || ||||| Sbjct 5447 CCAGGCATGAGGCCACGCTTCTTAAGCCAGAAGATGGA-GCAGAAGGAACCCGAGAAGAA 5389 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACT---GTC 36330 || || || || || ||||| || | || | ||| || || ||| ||| Sbjct 5388 GATGCCCTCAACGGCAGCAAAAGCCAGTAGACGCTCCGGGTAGGAGGACACACGAGGGTC 5329 Query 36331 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 | | |||||| | ||||| | || ||||| | || || || || ||||| || || Sbjct 5328 --GCA-CCACTTGAGCGCCCAGTGTGCTTTCTTCGTGACGCACGGAATGGTCTCAATCGC 5272 Query 36391 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 36450 | || |||| | || || | ||| || | || || ||||| | || || Sbjct 5271 ACGCAACAGATGATCCTTCTCGATCGCATCCTTGATGTACGTGTCAATGAGCAGTGAGTA 5212 Query 36451 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 36510 | ||||| || ||||| || ||||| || || ||||||||||| |||| |||||| | Sbjct 5211 GACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAATCCGTAGAAGCATCGAGCCTCAGG 5152 Query 36511 AATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCGTCACTG 36568 | ||| ||||| ||| || |||| || || || || ||||| |||||||| ||| Sbjct 5151 CACCTGCACTTCATTACTGAA--GTTCATGGCCAAGTTCTCGTTCACGATTCCGTCGCTG 5094 Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTC 36628 ||||| || || || | || || || || || | ||||| || || || || Sbjct 5093 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTAAGCTTGGTC 5034 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 ||||| |||| || | | || | || || | ||||| || || ||||| ||| Sbjct 5033 CAATCCTTGAGGTCGTGCACCAGGTCGATCTCCTCAGCAGTCCAGAAGGAGGCCTCGGCC 4974 Query 36689 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 || || ||||| | ||| | || || | || || || || | ||| || Sbjct 4973 TTCTTGTACATCTGCCACACTTCGTGCTCCTGGATAGGGAAGAGAACGAA 4924 >seq10576 Length=3682 Score = 98.7 bits (108), Expect = 1e-15 Identities = 776/1248 (62%), Gaps = 12/1248 (1%) Strand=Plus/Plus Query 65462 CGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTC 65521 || ||| | ||| |||| || || || |||||||| ||||| || || || |||| Sbjct 1104 CGTCTCCATTGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCACTAGCTTG 1163 Query 65522 CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAAT 65581 | ||| || || | ||| || | ||| || ||||| || || | || || || ||||| Sbjct 1164 CTTGCTCTCGAACGCATAGTTCATGAGGATGAACGCATCAGCCAGACCCTGGACGCCAAT 1223 Query 65582 ACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAAT 65641 ||| || || | ||| | | | || || | ||| |||| | |||||| || || | Sbjct 1224 ACCAATGGGGCGATGACGCATGTTGGACTTCCGAGCCTCTGCTACAGGATAGTAGTTGAC 1283 Query 65642 ATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAA 65701 || || | || ||||| || | || || |||||||| || | |||||| | | Sbjct 1284 GTCAATGACCTTGTTGAGGTTGCGAGTGATCACCTTGACCACTTCATACAGTTTCTGGTA 1343 Query 65702 ATCAAAT-CGCTCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGG 65760 || || ||| | || || ||| || || || ||||| |||| || || || | Sbjct 1344 GTCGAACACGCCC-TCGTCCACGAACTTGGGCAGCGCCACAGACGCCAAGTTGCACACTG 1402 Query 65761 CTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGG 65820 | ||||||| | || || | || | ||| ||| | || || | ||| | Sbjct 1403 CCACCTCATCGGGCGACGTGTACTCCATCACCTCGCAGCATAAGTTGCTGGAGCGGATCG 1462 Query 65821 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAG 65880 | || | || || || || ||| ||| || ||||| || || || || || Sbjct 1463 TGCCCAGGTTCTGCTGGTTCGACTTGCGGTTGGCTGCGTCCTTGTAGAGCATAAAGGGCA 1522 Query 65881 TACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATA 65939 || || || ||||| | || | || || ||| | | || | || || || | Sbjct 1523 CTCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGG-GCGTTAATGGTC 1581 Query 65940 GATTTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCC 65997 || | | | | ||| | ||||| | ||||| ||| ||||||||||||| Sbjct 1582 --TTCCGAGCGCGTCCTTCCTTCTCGTACTTTTCATACAGCGCTTCAAACTCGTCTCCCC 1639 Query 65998 AAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 66057 | | || | |||||| ||| | ||||| | | ||||| || | ||| Sbjct 1640 AGCACTCGTAGAGACCAGGAGCTTCGTTAGGACAGAATAGACTCCACTTACCATTGGCCT 1699 Query 66058 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTAT 66117 ||||| ||||| ||||||||||| | ||| || || || || || | | | | Sbjct 1700 CCACTCTCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAGAACAAGTCACGAGCGCGGT 1759 Query 66118 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACG 66177 | |||||| || ||||| ||||| |||||| | | | || ||||| | Sbjct 1760 GCAGCTCGTTGCCGTGGTTCTTGCGCAGATCCAGGAACTCGAACACGTCTGCGTGCCATG 1819 Query 66178 GTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 66237 | ||||| || || || | ||| || || ||| ||||| || | || | || Sbjct 1820 GCTCCAAATAGATAGCAAAGGATCCTTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAG 1879 Query 66238 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGG 66297 | |||| ||| | || | || ||| || ||||| |||||||| | ||||| || ||| Sbjct 1880 CCGTGTCGTTAAACACACGCAGCATGGGGATAATGCCATTGGAGGAGCCATTCGTGCCGC 1939 Query 66298 AGATATAGCTTCCACTTGCACGAATATTACTAAT--TGATAGACCTATTCCCCCTGCCAT 66355 ||| ||||| | || || || || || |||| || || || || ||| Sbjct 1940 GGATGTAGCTGTTGGTGGCTCGGATGTTGTGCATACTGATG--CCAATACCTCCCGCCCA 1997 Query 66356 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCAT 66415 || || || | |||||| | || | ||| || ||||||||||| || |||||| Sbjct 1998 CTTGGATATGCACGCGCATTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCATCCTG 2057 Query 66416 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 66475 ||| | ||| ||||| ||||| || |||| || || || || || | || Sbjct 2058 CATTGCCAATAGGAAACAAGAAGACAGCTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGT 2117 Query 66476 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTC 66535 ||| | |||||||| || | |||| || | || | ||||||||| | || | | Sbjct 2118 AGGGGTCGCGTGCGTGAAGAACTTTTGCGACATGAGCTCGTACGTCTCGAGCGCGGCCTG 2177 Query 66536 TATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 66595 || || | | || || || | || || |||| | ||| ||||| || | || || Sbjct 2178 GATGTCGCTCTTGTGGATGCCCAGCGCCACGCGCAGAATCATCTGCTGCGGCCGCTCCAC 2237 Query 66596 GATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 66655 | ||| || | || | |||| | || | || || || ||||| |||| Sbjct 2238 CACTTTGCCATTCACGCGGAAGAGGTAGCCTCGCTCGAGCGTCTTGAAGCCAAAGTAGTC 2297 Query 66656 GTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 66703 ||| ||||| || |||| || || |||||||||| | ||||| Sbjct 2298 GTACTCGAAGTCGCGGTCGTGGATGATGGCCGAGTTGAGCTCGTCCTT 2345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658044727800280