Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq12351 176 4e-39 >seq12351 Length=7116 Score = 176 bits (194), Expect = 4e-39 Identities = 314/457 (69%), Gaps = 20/457 (4%) Strand=Plus/Minus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 ||| ||||||||||| || | | ||||| | | || || || |||||||| || Sbjct 5305 CGGGAACGGACGCGGTGTACGCGTGAGCTGCTTCTGAAGTGGTTCCACGTGGTTTAGATA 5246 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 ||||| |||||||| | ||| | || || || || |||| || || || || || Sbjct 5245 CACGTGCGCGTCACCGATAACGTGGATGAACTCGCCAGGTTTCAGTCCAGTCACTTGCGC 5186 Query 21008 GATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTC 21067 | || |||||| || ||||||||||||||||| || || || || || |||||||| Sbjct 5185 AACAAGCCGCGTCAGCAGCGCGTAGCTGGCGATGTTGAATGGCACGCCAAGTCCCATGTC 5126 Query 21068 GGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAA 21127 ||| || | |||||||| |||||| || | ||||| |||||||| ||||| || || Sbjct 5125 GGCCGAACGCTGGTACATCTGGCACGATAATTCCCCGTCGGCCACGTAGAACTGGCAGAA 5066 Query 21128 AACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAAC 21187 | ||| ||||| || || |||||| ||| || || ||||||||||| ||| || Sbjct 5065 CATGTGGCAAGGTGGCAGTGCCATCTCGTTGAGATCAGCCGGGTTCCACGCCGACAGGAC 5006 Query 21188 GATGCGCCGATC-GTGGG--------GCCGCCTGTTAATTAGATCCACCACGTAACGC-A 21237 || || || || || || || || ||| ||| |||| | ||| | Sbjct 5005 AATCCGTCGGTCAGTCGGATTCGTACGCAGCTTGTGAAT------CACCTC----CGCAA 4956 Query 21238 GCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAAT 21297 | ||||||||||| || || ||||| || | || |||||| || ||||| | Sbjct 4955 GTTGGTCCACCCCTTGGCCAGTGTAGTCCGCATGCATGTCCGTGTACTTGGCACCAAAGT 4896 Query 21298 GTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 | | ||||||||| ||||| ||||| || || || || Sbjct 4895 GACGCCACTGGAAGCCGTAAACCGGTCCAAGGTCCCC 4859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427694841134160