Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5234 194 2e-44 seq6779 185 1e-41 seq10576 125 1e-23 >seq5234 Length=8456 Score = 194 bits (214), Expect = 2e-44 Identities = 420/620 (68%), Gaps = 15/620 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| || ||||| ||||||||| | ||| || || ||||| || || ||||| Sbjct 5507 CAGGCGAAGTCCGTGTGCATACCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGT 5448 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| ||||||||||| |||||||| || ||||| ||| || || || || ||||| Sbjct 5447 CCAGGCATGAGGCCACGCTTCTTAAGCCAGAAGATGGA-GCAGAAGGAACCCGAGAAGAA 5389 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-----CGCTG-TC 50132 ||| || || || || ||||| || | || | ||| || || || | || Sbjct 5388 GATGCCCTCAACGGCAGCAAAAGCCAGTAGACGCTCCGGGTAGGAGGACACACGAGGGTC 5329 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 | | |||||| | ||||| | || ||||| | || || || || || || || || Sbjct 5328 --GCA-CCACTTGAGCGCCCAGTGTGCTTTCTTCGTGACGCACGGAATGGTCTCAATCGC 5272 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 | || |||| | || || | ||| || | || || || || | || || Sbjct 5271 ACGCAACAGATGATCCTTCTCGATCGCATCCTTGATGTACGTGTCAATGAGCAGTGAGTA 5212 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 | ||||| || ||||| || ||||| ||||| ||||||||||| |||| |||||| | Sbjct 5211 GACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAATCCGTAGAAGCATCGAGCCTCAGG 5152 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCCGTCACTG 50370 | ||||||||| ||| || ||||| || || || || ||||| |||||||| ||| Sbjct 5151 CACCTGCACTTCATTACTGAA--GTTCATGGCCAAGTTCTCGTTCACGATTCCGTCGCTG 5094 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 ||||| || || || | || || || || || || |||||| || || || || Sbjct 5093 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTAAGCTTGGTC 5034 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 ||||| |||| || | | || | || || | ||||| || || ||||| ||| Sbjct 5033 CAATCCTTGAGGTCGTGCACCAGGTCGATCTCCTCAGCAGTCCAGAAGGAGGCCTCGGCC 4974 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 50550 || || ||||| | ||| | || || | ||||| ||||| | ||| || | || ||| Sbjct 4973 TTCTTGTACATCTGCCACACTTCGTGCTCCTGGATAGGGAAGAGAACGAAGCGGTTGGGA 4914 Query 50551 TTTGGTGCAAGGATCGGTTC 50570 || | |||| |||||| Sbjct 4913 TTCTCCACGAGGAACGGTTC 4894 >seq6779 Length=4860 Score = 185 bits (204), Expect = 1e-41 Identities = 419/627 (67%), Gaps = 13/627 (2%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 |||| || || |||||||| ||||| ||||| || | ||| || | ||||| || | Sbjct 657 ACATTAAGCACGCGAAATCCGTGTGCATGCCCTCATCACGACTGATCATCTCGTTTGAGA 716 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 | | || || ||||| || || ||||| |||||||| || | ||| ||||||||| | Sbjct 717 AGCTCAGACCAGGCATAAGACCGCGCTTCTTAAGCCAGAAAACGGAACAAAATGACCCCG 776 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA-----ACTGGC 50126 |||||||||| ||||| ||||| || || || | || | |||| | || || | Sbjct 777 AAAAGAAGATACCTTCCACTGCAGCGAACGCTAGCAGACGCTCTGCGTACGACGACACAC 836 Query 50127 GC-TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 50185 || |||| ||| ||| | ||||| | ||||||||| | ||||| || || || | Sbjct 837 GCGGGTCA---CACCATTTTAGCGCCCAGTTGGCCTTCTTCTGGACACATGGGATAGTCT 893 Query 50186 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 50245 | || ||| | | | || ||| || || || | || || || || | | Sbjct 894 CGATAGCACGTAGCAAGTGGTCTTTCTCCACGGCGTCCTTGATGTATGTGTCAATAAGCA 953 Query 50246 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 50305 | ||||| ||||| || || || || || || ||||| || |||||||| || | || Sbjct 954 GCGAATACACCTCCGAGTGGATATTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGAG 1013 Query 50306 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCC 50363 | || | ||||||||||| ||| || ||||| || | || || || || || || Sbjct 1014 CTTCCGGTATCTGCACTTCATTACTGAA--GTTCATGGCCAGGTTCTCGTTGACGATACC 1071 Query 50364 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG 50423 |||||| || || || ||||||| || | || || || || |||||| ||| || Sbjct 1072 GTCACTAGCAGCGAAGAACGCCAGAACGTACTTGATGAAGTGACGCTCGTTGTCTGTGAG 1131 Query 50424 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 50483 ||| ||| || |||| ||| | | || | || || | ||||| || || || Sbjct 1132 TTTTGCCCAGTCGTTGAGATCGTGCACCAGRTCCAGCTCCTCGGCCGTCCAGAAGGAGGC 1191 Query 50484 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543 ||| ||||| || ||||| | ||| | ||| || | || || ||||| | || || | Sbjct 1192 CTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGAATGGGGAAGAGCACGAAGCG 1251 Query 50544 ATTTGGATTTGGTGCAAGGATCGGTTC 50570 || ||||| || ||||| ||| || Sbjct 1252 GTTGGGATTCGGGACAAGGTACGGCTC 1278 >seq10576 Length=3682 Score = 125 bits (138), Expect = 1e-23 Identities = 466/726 (64%), Gaps = 6/726 (1%) Strand=Plus/Plus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||| |||||||||||||| |||| | |||||| ||||| |||||| | | Sbjct 1623 TTCAAACTCGTCTCCCCAGCACTCGTAGAGACCAGGAGCTTCGTTAGGACAGAATAGACT 1682 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 79978 ||||| |||| ||| |||| ||||| ||||||||||| | ||| || || || || Sbjct 1683 CCACTTACCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAGAA 1742 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 80038 || || | | | ||| |||||| || ||||| ||||| |||||| | | Sbjct 1743 CAAG-TCACGAGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGATCCAGGAACTCGA 1801 Query 80039 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTC 80098 | || | ||||| || ||||| || || || | ||| || || ||| | Sbjct 1802 ACACGTCTGCGTGCCATGGCTCCAAATAGATAGCAAAGGATCCTTTGCGCTTACCTCCGC 1861 Query 80099 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 80158 |||| || | || | ||| |||| ||| | || | || ||| || ||||| ||||||| Sbjct 1862 CCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAGCATGGGGATAATGCCATTGG 1921 Query 80159 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAG 80216 | | ||||| || ||| ||| ||||| |||| || || | | | | |||| Sbjct 1922 AGGAGCCATTCGTGCCGCGGATGTAGCTGTTGGTGGCTCGGATGTTGTGCATACTGAT-- 1979 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 || || || || ||| || || || | |||||| | || | ||| || |||||||| Sbjct 1980 GCCAATACCTCCCGCCCACTTGGATATGCACGCGCATTGCTTGAGCGTGTCGTAGATGCC 2039 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336 ||| || ||||| ||| | ||| ||||| ||||| || |||| || Sbjct 2040 CTCGATCGAGTCATCCTGCATTGCCAATAGGAAACAAGAAGACAGCTGAGGACGTGGCGT 2099 Query 80337 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 80396 || || || || | ||||| | |||||||| || | |||| |||| || | ||| Sbjct 2100 GCCGGCGTTGAAGAGAGTAGGGGTCGCGTGCGTGAAGAACTTTTGCGACATGAGCTCGTA 2159 Query 80397 CGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACAT 80456 |||||| | || | | || || | | || || || | ||| || |||| | ||| Sbjct 2160 CGTCTCGAGCGCGGCCTGGATGTCGCTCTTGTGGATGCCCAGCGCCACGCGCAGAATCAT 2219 Query 80457 GTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGT 80516 ||||| || | || || | ||| ||| | || | ||| | || | || Sbjct 2220 CTGCTGCGGCCGCTCCACCACTTTGCCATTCACGCGGAAGAGGTAGCCTCGCTCGAGCGT 2279 Query 80517 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 80576 || || ||||| |||| ||| ||||| || |||| || || |||||||||| | Sbjct 2280 CTTGAAGCCAAAGTAGTCGTACTCGAAGTCGCGGTCGTGGATGATGGCCGAGTTGAGCTC 2339 Query 80577 ATCCTT 80582 ||||| Sbjct 2340 GTCCTT 2345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718129033869880