Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6779 156 6e-33 seq5234 154 2e-32 seq10576 125 1e-23 >seq6779 Length=4860 Score = 156 bits (172), Expect = 6e-33 Identities = 411/624 (66%), Gaps = 7/624 (1%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 |||| || || |||||||| ||||| |||||||| | ||| || | ||||| || | Sbjct 657 ACATTAAGCACGCGAAATCCGTGTGCATGCCCTCATCACGACTGATCATCTCGTTTGAGA 716 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAG 42176 | | || || ||||| || || ||||| |||||||| || | || |||||| || | Sbjct 717 AGCTCAGACCAGGCATAAGACCGCGCTTCTTAAGCCAGAAAACGGAACAAAATGACCCCG 776 Query 42177 AAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCACTG 42235 |||||||||| ||||| ||||| || || || | || | |||| | || || ||| Sbjct 777 AAAAGAAGATACCTTCCACTGCAGCGAACGCTAGCAGACGCTCTGCGTACGACGACACAC 836 Query 42236 TCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 | || ||| ||| | ||||| | ||||||||| | ||||| || || || || | Sbjct 837 GCGGGTCACACCATTTTAGCGCCCAGTTGGCCTTCTTCTGGACACATGGGATAGTCTCGA 896 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 | ||| | | | || ||| || || || | ||||| || || | || Sbjct 897 TAGCACGTAGCAAGTGGTCTTTCTCCACGGCGTCCTTGATGTATGTGTCAATAAGCAGCG 956 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 ||||| || || || || || || || || ||||| || |||||||| || | || | Sbjct 957 AATACACCTCCGAGTGGATATTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGAGCTT 1016 Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCGTC 42471 | | | ||| ||||| ||| || ||||| || | || ||||| || || ||||| Sbjct 1017 CCGGTATCTGCACTTCATTACTGAA--GTTCATGGCCAGGTTCTCGTTGACGATACCGTC 1074 Query 42472 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTT 42531 ||| || || || ||||||| || | || || || | |||| ||| | ||| Sbjct 1075 ACTAGCAGCGAAGAACGCCAGAACGTACTTGATGAAGTGACGCTCGTTGTCTGTGAGTTT 1134 Query 42532 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTC 42591 ||| || |||| ||| | | || | || || ||||||| || || || || Sbjct 1135 TGCCCAGTCGTTGAGATCGTGCACCAGRTCCAGCTCCTCGGCCGTCCAGAAGGAGGCCTC 1194 Query 42592 TGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATT 42651 ||||| || ||||| | ||| | || || | ||||| ||||| | || || | || Sbjct 1195 CGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGAATGGGGAAGAGCACGAAGCGGTT 1254 Query 42652 TGGATTTGGTGCAAGGATCGGTTC 42675 ||||| || ||||| ||| || Sbjct 1255 GGGATTCGGGACAAGGTACGGCTC 1278 >seq5234 Length=8456 Score = 154 bits (170), Expect = 2e-32 Identities = 411/620 (66%), Gaps = 15/620 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| || ||||| |||||| || | ||| || | ||||| || || ||||| Sbjct 5507 CAGGCGAAGTCCGTGTGCATACCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGT 5448 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||| ||||||||||| |||||||| || || || ||| || || || || ||||| Sbjct 5447 CCAGGCATGAGGCCACGCTTCTTAAGCCAGAAGATGGA-GCAGAAGGAACCCGAGAAGAA 5389 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACT---GTC 42237 ||| || || || || ||||| || | || | ||| || || ||| ||| Sbjct 5388 GATGCCCTCAACGGCAGCAAAAGCCAGTAGACGCTCCGGGTAGGAGGACACACGAGGGTC 5329 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 | | |||||| | ||||| | || ||||| | || || || || || || || || Sbjct 5328 --GCA-CCACTTGAGCGCCCAGTGTGCTTTCTTCGTGACGCACGGAATGGTCTCAATCGC 5272 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 | || |||| | || || | ||| || | || || || || | || || Sbjct 5271 ACGCAACAGATGATCCTTCTCGATCGCATCCTTGATGTACGTGTCAATGAGCAGTGAGTA 5212 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 | || || || ||||| || ||||| ||||| ||||||||||| |||| ||||| | Sbjct 5211 GACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAATCCGTAGAAGCATCGAGCCTCAGG 5152 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCGTCACTG 42475 ||||| ||||| ||| || ||||| || || || |||||||| |||||||| ||| Sbjct 5151 CACCTGCACTTCATTACTGAA--GTTCATGGCCAAGTTCTCGTTCACGATTCCGTCGCTG 5094 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTC 42535 ||||| || || || | || || || || || | |||| || | || || Sbjct 5093 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTAAGCTTGGTC 5034 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 ||||| |||| || | | || | || || | ||||| || || || || ||| Sbjct 5033 CAATCCTTGAGGTCGTGCACCAGGTCGATCTCCTCAGCAGTCCAGAAGGAGGCCTCGGCC 4974 Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGA 42655 || || ||||| | ||| | || || | || || ||||| | ||| || | || ||| Sbjct 4973 TTCTTGTACATCTGCCACACTTCGTGCTCCTGGATAGGGAAGAGAACGAAGCGGTTGGGA 4914 Query 42656 TTTGGTGCAAGGATCGGTTC 42675 || | |||| |||||| Sbjct 4913 TTCTCCACGAGGAACGGTTC 4894 >seq10576 Length=3682 Score = 125 bits (138), Expect = 1e-23 Identities = 479/745 (64%), Gaps = 8/745 (1%) Strand=Plus/Plus Query 71943 TTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATG 72001 ||| |||||||||||||| ||| | || | |||||| ||| || ||||| | | Sbjct 1623 TTCAAACTCGTCTCCCCA-GCACTCGTAGAGACCAGGAGCTTCGTTAGGACAGAATAGAC 1681 Query 72002 ACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATA 72060 ||||| |||| | | |||| ||||| ||||||||||| | ||| || || || | Sbjct 1682 TCCACTTACCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAGA 1741 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120 | || || | | | ||| |||||| || ||||| ||||| |||||| | Sbjct 1742 ACAAG-TCACGAGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGATCCAGGAACTCG 1800 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180 | | || | ||||| || ||||| || || || | ||| || || ||| Sbjct 1801 AACACGTCTGCGTGCCATGGCTCCAAATAGATAGCAAAGGATCCTTTGCGCTTACCTCCG 1860 Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240 ||||| || | || | ||| |||| ||| | || | || ||| || ||||| |||||| Sbjct 1861 CCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAGCATGGGGATAATGCCATTG 1920 Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAAT--TGATA 72298 || | ||||| || ||| ||| ||||| |||| || || ||| || |||| Sbjct 1921 GAGGAGCCATTCGTGCCGCGGATGTAGCTGTTGGTGGCTCGGATGTTGTGCATACTGATG 1980 Query 72299 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 72358 || || || || ||| || || || | |||||| | || | ||| || ||||||| Sbjct 1981 --CCAATACCTCCCGCCCACTTGGATATGCACGCGCATTGCTTGAGCGTGTCGTAGATGC 2038 Query 72359 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 72418 |||| || |||||| ||| | ||| ||||| ||||| || |||| | Sbjct 2039 CCTCGATCGAGTCATCCTGCATTGCCAATAGGAAACAAGAAGACAGCTGAGGACGTGGCG 2098 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 | || || || || | ||||| | |||||||| || | |||| |||| || | || Sbjct 2099 TGCCGGCGTTGAAGAGAGTAGGGGTCGCGTGCGTGAAGAACTTTTGCGACATGAGCTCGT 2158 Query 72479 ACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACA 72538 ||||||| | || | | || || | | || || || | ||| || |||| | || Sbjct 2159 ACGTCTCGAGCGCGGCCTGGATGTCGCTCTTGTGGATGCCCAGCGCCACGCGCAGAATCA 2218 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 | ||||| || | || || | ||| ||| | || | |||| | || | | Sbjct 2219 TCTGCTGCGGCCGCTCCACCACTTTGCCATTCACGCGGAAGAGGTAGCCTCGCTCGAGCG 2278 Query 72599 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTT 72658 | || || ||||| |||| ||| ||||| || |||| || || |||| ||||| | Sbjct 2279 TCTTGAAGCCAAAGTAGTCGTACTCGAAGTCGCGGTCGTGGATGATGGCCGAGTTGAGCT 2338 Query 72659 TATCCTTATATTTGTTAACTATATC 72683 ||||| | || | ||||| || Sbjct 2339 CGTCCTTGTGTTGCATCACTATCTC 2363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671008604700920