Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5234 185 1e-41 seq6779 147 3e-30 seq12351 125 1e-23 seq5172 107 3e-18 seq10576 104 3e-17 >seq5234 Length=8456 Score = 185 bits (204), Expect = 1e-41 Identities = 588/885 (66%), Gaps = 44/885 (5%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| | |||||||| ||||| |||||||||| ||||| | || ||| |||| ||| Sbjct 4957 TGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATCGACCTGGTG 5016 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 | ||||| | |||||| | | | || || | ||||| | || || |||| Sbjct 5017 CACGACCTCAAGGATTGGACCAAGCTT---ACGGACAACGAGCGCCACTTCATCAAGCAC 5073 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA--T 125199 | | |||||||| || | | ||| |||||||| ||||| || || | || || | Sbjct 5074 GTGCTCGCCTTCTTCGCAGCCAGCGACGGAATCGTGAACGAGAACTTG--GCCATGAACT 5131 Query 125200 TCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGATT 125258 || | | || || | || |||| ||| ||||| ||||||||||| ||| || Sbjct 5132 TCAGTAATGAAGTGCAGGTGCCTGAGGC-TCGATGCTTCTACGGATTCCAGATCGCCATC 5190 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAA 125318 |||||| | |||||||| | ||||| || ||||||| |||||| ||| || | Sbjct 5191 GAGAACATCCACTCGGAGGTCTACTCACTGCTCATTGACACGTACATCAAGGATGCG-AT 5249 Query 125319 CGTAAACACATGCTCTTTAACG--CAATCGACACGGTGCCGTCTAT-ACGTAAAAAGGCT 125375 || || || ||| | || | || || || | |||| | ||| | |||| | Sbjct 5250 CGAGAAGG-ATCATCTGTTGCGTGCGATTGAGACCATTCCGTGCGTCACGAAGAAAG-CA 5307 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 || |||| | | |||| ||| ||| || ||| | || | || |||| Sbjct 5308 CACTGGGCGCTCAAGTGGTGCGACCCTCGTGTGTCCTCCTACCCGGAGCGTCTACTGGCT 5367 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCTCAA 125494 || || ||||| |||||||||||||| |||||| || ||| ||||||| ||||| || Sbjct 5368 TTTGCTGCCGTTGAGGGCATCTTCTTCTCGGGTTCCTTCTGCT-CCATCTTCTGGCTTAA 5426 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 |||||| || |||||||| ||||| | | |||||| | || ||| |||||||| Sbjct 5427 GAAGCGTGGCCTCATGCCTGGACTCAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGG 5486 Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAG--TGC--- 125609 | ||| ||||| ||| || |||| ||| ||| ||| | | ||| Sbjct 5487 TATGCACACGGACTTCGCCTGCCTCCTGTACTCCAAG---CTG-GTCACTAAGCTGCCGG 5542 Query 125610 AGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAG 125669 ||| || ||| | || |||| | || || || ||| ||| || || ||| Sbjct 5543 AGAGCC-GCGTGCACGAGATCAT-----TCGTGAC----GCGGTGGTGATTGAGCACGAG 5592 Query 125670 TTTCTAACCGAATCCCTACCGGTC-AGCATGATTGGCATGAACTGCAAGCTAATGTGCGA 125728 || | || || || ||||| ||| ||||||||||||||| || |||||| | Sbjct 5593 TTCGTGCGTGACTCGCTGCCGGTGGAGC-TGATTGGCATGAACTCGGGCCTCATGTGCCA 5651 Query 125729 GTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAG-TTGATTGGCCGCAAGATTTACA 125787 |||||| ||||| || || || ||||| |||||| | ||| | | | |||||| ||| Sbjct 5652 GTACATTGAGTTCGTTGCTGACCGTCTGCTGTACTCGCTTGGTGTGTC-CAAGATCTACC 5710 Query 125788 ACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTT 125847 |||||||||| || || || | ||| || || || || |||| ||||||||||| | Sbjct 5711 ACGCCAAGAACCCTTTCGACTGGATGGACATGATCTCTCTCCAGGGCAAGACCAACTTCT 5770 Query 125848 TCGAGAAGAAGGTCAGCGAGTA--CAAACGCTACGGTGTCGGTGT 125890 |||||||| || ||||||| | || ||| || |||||||| Sbjct 5771 TCGAGAAGCGTGTGGGCGAGTACTCCAAGGCT--GGCGTCGGTGT 5813 >seq6779 Length=4860 Score = 147 bits (162), Expect = 3e-30 Identities = 583/897 (65%), Gaps = 56/897 (6%) Strand=Plus/Minus Query 124995 CTGTTTCCCAT-CAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 || || ||||| |||| | || ||| | ||| | |||||||| ||||| |||||||||| Sbjct 1242 CTCTTCCCCATTCAGG-AGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCTCCTT 1184 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGG--AGACTCGTTTG 125111 ||||||| ||| ||| | || ||| | || || |||| |||| | |||| Sbjct 1183 CTGGACGGCCGAGGAGCTGGAYCTGGTGCACGATCTCAACGACTGGGCAAAACTC----- 1129 Query 125112 ACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 || || | ||||| | || || | || || |||| ||||| || | || || Sbjct 1128 ACAGACAACGAGCGTCACTTCATCAAGTACGTTCTGGCGTTCTTCGCTGCTAGTGACGGT 1069 Query 125172 ATCGTCAACGACAATCTGTTGACACGA--TTCTCTCAAGAGTTGACCATTCCAGAGGTGT 125229 ||||||||||| || ||| | || || ||| | | || || || || || | | Sbjct 1068 ATCGTCAACGAGAACCTG--GCCATGAACTTCAGTAATGAAGTGCAGATACCGGAAGC-T 1012 Query 125230 CG-TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 || ||||| ||||| ||||| ||| || ||||| | |||||||| |||| || Sbjct 1011 CGCTGCTTCTACGGCTTCCAGATCGCTATCGAGAATATCCACTCGGAGGTGTATTCGCTG 952 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGT----AAA---CACATGCTCTTTAACGC 125341 || ||||||| ||||| || ||| ||| ||| ||| |||| | || Sbjct 951 CTTATTGACACATACATCAAGGA--CGC--CGTGGAGAAAGACCACTTGCTACGT---GC 899 Query 125342 AATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGA 125401 ||||| || | || | | | | || ||||| | |||| | | ||| || Sbjct 898 TATCGAGACTATCCCATGTGTCCAGAAGAAGGCCAACTGGGCGCTAAAATGGTGTGACCC 839 Query 125402 CGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTT 125461 ||| |||||||| || | ||| | || ||||| || || || || |||||||| Sbjct 838 GCGTGTGTCGTCGTACGCAGAGCGTCTGCTAGCGTTCGCTGCAGTGGAAGGTATCTTCTT 779 Query 125462 TTCGGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGA 125520 |||||| | ||||| || | || ||||| ||||||||||| || ||||| || |||| Sbjct 778 TTCGGGGTCATTTTGTT-CCGTTTTCTGGCTTAAGAAGCGCGGTCTTATGCCTGGTCTGA 720 Query 125521 CGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTAC 125580 | |||||| | || ||| || |||||| | ||| || || || || Sbjct 719 GCTTCTCAAACGAGATGATCAGTCGTGATGAGGGCATGCACACGGATTTCGCGTGCTTAA 660 Query 125581 TGTT-TCGCAACTATCT-----GCGTCCCGAGTGCAGA-TCCAGCGATGAAAAGGTCATC 125633 ||| ||| | ||| | | || ||| || | |||| ||| | |||| Sbjct 659 TGTACTCGAAGCTAGTTAACAAGATACCGGAGAGCCGTGTCCA-CGA------GATCAT- 608 Query 125634 AACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC 125693 | | |||||| ||| ||| || || ||||| | ||| || || || || Sbjct 607 ----TCG----CGATGCTGTGGTGATTGAGCACGAGTTCGTGTGCGACTCGCTGCCTGTG 556 Query 125694 -AGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCG 125752 ||| | || || ||||||| ||| ||||| | ||||| ||||||||||| ||||| Sbjct 555 GAGCTT-ATCGGTATGAACTCAGCGCTCATGTGTCAATACATTGAGTTTGTGGCGGATCG 497 Query 125753 TCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCAT 125812 |||||| ||| ||| || |||||| ||||||| ||||| || || || | || Sbjct 496 TCTACTATACTCACTGAGTGTGTCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGAT 437 Query 125813 GACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 | || || ||||| |||| ||||| ||||| ||||||||| || ||||||| Sbjct 436 GGACATGATCTCACTGCAGGGCAAGACAAACTTCTTCGAGAAGCGTGTGGGCGAGTA 380 >seq12351 Length=7116 Score = 125 bits (138), Expect = 1e-23 Identities = 279/411 (68%), Gaps = 6/411 (1%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || || || || || || ||||| ||||||||| | |||| || ||||||| ||| Sbjct 4859 GGGGACCTTGGACCGGTTTACGGCTTCCAGTGGCGTCACTTTGGTGCCAAGTACACGGAC 4918 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGACACTC 70184 ||| | | ||||| | || || || || || ||| |||| || | ||| ||| | Sbjct 4919 ATGCATG-CGGACTACACTGGCCAAGGGGTGGACCAACTTGCGGAGG-TGATTCACAAGC 4976 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | || ||||| || || | |||| || ||| | ||||| || || ||| | Sbjct 4977 TGCGTACGAATCCGACTGACCGACGGATTGTCCTGTCGGCGTGGAACCCGGCTGATCTCA 5036 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATGGCAAA 70303 || | |||||||| ||||| || ||| |||| || ||||| ||| | ||| || || Sbjct 5037 ACGAGATGGCACTGCCACCTTGCCACATGTTCTGC-CAGTTCTACGTGGCCGACGGGGAA 5095 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 || || ||| ||||| ||| | ||||||||||| || || || || || ||||| Sbjct 5096 TTATCGTGCCAGATGTACCAGCGTTCGGCCGACATGGGACTTGGCGTGCCATTCAACATC 5155 Query 70364 GCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAG 70423 || ||||| | || |||||| | |||| || | || || |||||| | |||| Sbjct 5156 GCCAGCTACGCGCTGCTGACGCGGCTTGTTGCGCAAGTGACTGGACTGAAACCTGGCGAG 5215 Query 70424 TTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCA 70474 ||| | ||| || || ||||| ||||||||| |||| ||| | || ||| Sbjct 5216 TTCATCCACGTTATCGGTGACGCGCACGTGTATCTAAACCACGTGGAACCA 5266 >seq5172 Length=6496 Score = 107 bits (118), Expect = 3e-18 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGATTG 125703 ||| || ||| ||| || || ||||| || ||| || || || || ||| | || | Sbjct 3119 CGACGCTGTGGTGATTGAGCACGAGTTCGTATGCGACTCGCTGCCTGTGGAGCTT-ATCG 3177 Query 125704 GCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG 125763 | ||||||| ||| ||||| | ||||| ||||||||||| ||||||||||| ||| Sbjct 3178 GTATGAACTCAGCGCTCATGTGTCAATACATTGAGTTTGTGGCGGATCGTCTACTATACT 3237 Query 125764 AGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823 ||| || |||||| ||||||| ||||| || || || | ||| || || | Sbjct 3238 CACTGAGTGTGTCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGATCT 3297 Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 |||| |||| ||||| ||||| ||||||||| || ||||||| Sbjct 3298 CACTGCAGGGCAAGACAAACTTCTTCGAGAAGCGTGTGGGCGAGTA 3343 Score = 104 bits (114), Expect = 3e-17 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGATTG 125703 ||| || ||| ||| || || ||||| || ||| || || || || ||| | || | Sbjct 6051 CGACGCTGTGGTGATTGAGCACGAGTTCGTATGCGACTCGCTGCCTGTGGAGCTT-ATCG 5993 Query 125704 GCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG 125763 | ||||||| ||| ||||| ||||||| ||||||||||| || |||||||| ||| Sbjct 5992 GTATGAACTCAGCGCTCATGTGTCAGTACATTGAGTTTGTGGCGGACCGTCTACTATACT 5933 Query 125764 AGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823 || || |||||| ||||||| ||||| || || || | ||| || || | Sbjct 5932 CACTGGGTGTGTCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGATCT 5873 Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 |||| |||| ||||| ||||| ||||||||| || ||||||| Sbjct 5872 CACTGCAGGGCAAGACAAACTTCTTCGAGAAGCGTGTGGGCGAGTA 5827 >seq10576 Length=3682 Score = 104 bits (114), Expect = 3e-17 Identities = 313/477 (66%), Gaps = 10/477 (2%) Strand=Plus/Minus Query 96910 TCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTG 96969 |||| ||||| || |||||||| ||||| || || || | || ||||||| ||| | Sbjct 1831 TCTATTTGGAGCCATGGCACGCAGACGTGTTCGAGTTCCTGGATCTGCGCAAGAACCACG 1772 Query 96970 GCTTTGAAGAGGCAC-GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTC 97028 || || | |||| | || | |||||||| || || ||||||||||| ||| | ||| Sbjct 1771 GCAACGA-GCTGCACCGCGCTCGTGACTTGTTCTACGCGCTCTGGGTGCCTGATCTCTTC 1713 Query 97029 ATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGT 97088 |||||| | || | | | ||| | ||||| ||| | || || || | || ||| Sbjct 1712 ATGAAGAGAGTGGAGGCCAATGGTAAGTGGAGTCTATTCTGTCCTAACGAAGCTCCTGGT 1653 Query 97089 CTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC 97148 || | ||| |||||||| || |||||||| || ||| |||||| | || || Sbjct 1652 CTCTACGAGTGCTGGGGAGACGAGTTTGAAGCGCTGTATGAAAAGTACGAGAAGGAAGGA 1593 Query 97149 CG-ATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGT 97207 || || |||| | | | || | | |||||| |||||| || || ||| | Sbjct 1592 CGCGCTCGGAAGACCA-TTAACGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAGAT 1534 Query 97208 AGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACG 97267 ||||| ||| || | || ||||||||||| | | || ||||| ||||| | Sbjct 1533 CGAGACGGGAGTGCCCTTTATGCTCTACAAGGACGCAGCCAACCGCAAGTCGAACCAGCA 1474 Query 97268 CCACTTGGGCACCATCAAGGGCTC---CAATCTGTGCACGGAAATTGTAGAGTACGCCTC 97324 || ||||||| ||| |||| ||| | ||| || | | |||||| | || Sbjct 1473 GAACCTGGGCACGATC---CGCTCCAGCAACTTATGCTGCGAGGTGATGGAGTACACGTC 1417 Query 97325 TCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 || || ||| |||||| ||| |||| || || ||||||||||| || || Sbjct 1416 GCCCGATGAGGTGGCAGTGTGCAACTTGGCGTCTGTGGCGCTGCCCAAGTTCGTGGA 1360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740914999142920