Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7887 96.9 8e-15 seq5421 89.7 1e-12 >seq7887 Length=10481 Score = 96.9 bits (106), Expect = 8e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || ||||| | ||||| || || || || || Sbjct 1195 GTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCCG 1136 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || ||||| || || || || || ||||| || || ||||| Sbjct 1135 GCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTG 1076 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | | | || || || || || || || || ||||| || ||||| || Sbjct 1075 -ACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGT 1017 Query 104542 TTTTACAAATATCTGCATTTTGTGT 104566 || || || ||||||||||| ||| Sbjct 1016 CTTGACGAAAATCTGCATTTTCTGT 992 >seq5421 Length=2020 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| || || | ||||| || ||||| || || || ||| || || | || || Sbjct 898 AGTACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAATCACTCAGTGTGCGGCCATCC 839 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| ||||| || | ||| || ||||| || || ||||| || ||| Sbjct 838 TCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 779 Query 104468 TGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| ||| || || || || | | || || || || || || || || || Sbjct 778 TGAATCTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGT 720 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||| || || || || || || || |||||||| || Sbjct 719 CTTGCCCGTTAGCGTCTTCACGAAAATCTGCATCTT 684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151168751070436