Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq7380 123 2e-23 >seq7380 Length=4531 Score = 123 bits (136), Expect = 2e-23 Identities = 192/270 (71%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACG-CCACCT 5558 |||||| ||| ||||| || || ||||| | | |||| || || | | || |||||| Sbjct 1802 CACGCCAGTGCTGCCGAAGCCACCGGCGCCACGTGCCGTCTCCTCAAT-CTCGTCCACCT 1744 Query 5559 CTTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCT 5618 | | || || ||| || | |||| ||| || ||||| | ||||| || || Sbjct 1743 CCTGGACCTCCGGGTACTCGATCTTCTCGAGGATGAGTTGCGCCACGCGGTCCCCGCGCT 1684 Query 5619 TTACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTA 5676 | || ||| |||| | |||| ||||||||| | ||||||||||||||||||||| Sbjct 1683 TGACGGGGAAGTCGTCGCT--CGAATGGTTGAACAGAATCACGCCCACGTTGCCGCGGTA 1626 Query 5677 GTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCG 5736 ||||||||| || ||||| |||||| |||||||| | ||| || ||||| ||||| Sbjct 1625 GTCGGCGTCGATGACGCCAGCGCCCGTATCGATGAATTTCTTCCAGGCGAGGCCTGAGCG 1566 Query 5737 GGGAGCCACGCGGCCGTAGCACCCATCGGG 5766 || || || || ||||||| || || || Sbjct 1565 AGGGGCTACACGTGCGTAGCAGCCGTCCGG 1536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429972808869704