Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq12351 122 6e-23 >seq12351 Length=7116 Score = 122 bits (134), Expect = 6e-23 Identities = 326/493 (66%), Gaps = 13/493 (3%) Strand=Plus/Minus Query 25412 GAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTG 25471 |||||| ||| || ||||| ||||| | || || ||||| ||||| || | | ||| Sbjct 5281 GAGCTGCTTCTGAAGTGGTTCCACGTGGTTTAGATACACGTGCGCGTCACCGATAACGTG 5222 Query 25472 GACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTA 25531 || ||||| || |||| || || || || | || | | ||| || || ||| Sbjct 5221 GATGAACTCGCCAGGTTTCAGTCCAGTCACTTGCGCAACAAGCCGCGTCAGCAGCGCGTA 5162 Query 25532 GCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGAC 25591 |||||||||||| || || || || | ||||||| | |||| | |||||| | ||| | Sbjct 5161 GCTGGCGATGTTGAATGGCACGCCAAGTCCCATGT-CGGCCGAACGCTGGTACATCTGGC 5103 Query 25592 ACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTA 25651 |||| | || ||||| |||||| ||||| || | ||| ||| || || || || | Sbjct 5102 ACGATAATTCCCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCAAGGTGGCAGTGCCA 5043 Query 25652 TAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTC-TTCTGGGTTG 25710 | | | || |||||||| || ||| || || | | ||| || | | | Sbjct 5042 TCTCGTTGAGATCAGCCGGGTTCCACGCCGACAGGACAATCCGTCGGTCAGTCGGATTCG 4983 Query 25711 TCC----CTGATAAGATCCGCGGTGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGT 25765 | | || | | ||| | | || || || |||||||| || | ||||| Sbjct 4982 TACGCAGCTTGTGA-ATCACC-----TCCGCAAGTTGGTCCACCCCTTGGCCAGTGTAGT 4929 Query 25766 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTC 25825 | || |||||||||||||| || || || | | ||||||||| ||||| ||||||| Sbjct 4928 CCGCATGCATGTCCGTGTACTTGGCACCAAAGTGACGCCACTGGAAGCCGTAAACCGGTC 4869 Query 25826 CTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCAT 25885 | ||||| ||| |||||| | | | || | ||||||| | || | || |||| Sbjct 4868 CAAGGTCCCCAACTTCCCGATTCGGCAGTCCTCGACTATCCAAGTACTCGCGCGATCCAT 4809 Query 25886 TGGCGTCCCAGAT 25898 || |||||||||| Sbjct 4808 TGCCGTCCCAGAT 4796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340073068137891