Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq7887 93.3 4e-14 seq9710 87.8 2e-12 seq5421 86.0 5e-12 >seq7887 Length=10481 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || | || | || || ||||||| |||||||| ||| || Sbjct 1190 CTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGC-CGTCCTCGAGCTGCTTGCCGGCGA 1132 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | ||||||||| || ||| | | ||||||||| ||||||||||||| | Sbjct 1131 AGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACAT 1072 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||| | || | | |||| |||| || ||||| || || || || || || | Sbjct 1071 TGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGA 1012 Query 48714 CAAAAATCTGCAT 48726 | ||||||||||| Sbjct 1011 CGAAAATCTGCAT 999 >seq9710 Length=10376 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 48537 CCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAA 48596 ||||||| |||||||| || | | || ||||||| |||||||| ||| || | | Sbjct 864 CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 923 Query 48597 TTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG 48656 | | ||||||||| || ||| | | ||||||||| ||||||||||||| | Sbjct 924 TCAGACGCTGCTGGTCAGGCGGGATTCCYTCCTTGTCCTGGATTTTCTGCTTGACATTGT 983 Query 48657 CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAA 48716 | ||| | |||| | |||| || | || ||||| || || || | || ||||||| Sbjct 984 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 1043 Query 48717 AAATCTGCAT 48726 | |||||||| Sbjct 1044 AGATCTGCAT 1053 >seq5421 Length=2020 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/195 (70%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||||||| || | || | ||||| |||||||| || || | Sbjct 878 CTCCTTCTGGATGTTGTAATCACTCAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 819 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 ||| | |||||||| || ||| | | |||||||||| ||| |||||||| | | Sbjct 818 AATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTT 759 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || || | || | | |||| |||| || || || || || || || || ||| Sbjct 758 GTCG--ATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTTAGCGTCTTC 701 Query 48713 ACAAAAATCTGCATC 48727 || |||||||||||| Sbjct 700 ACGAAAATCTGCATC 686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421171279037567