Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5421 107 2e-18 seq7195 86.0 6e-12 >seq5421 Length=2020 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||| || || ||||| || | ||| || ||||||| ||| | |||||| Sbjct 1352 CACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTC 1293 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || | ||||| | | ||||| || || || || ||||| ||||| | Sbjct 1292 AAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTG 1233 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || ||| ||| | ||| | ||| | | || ||||| | |||||| || || Sbjct 1232 AATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTT 1173 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || ||||||||||||||||||| Sbjct 1172 GCCCGTCAGCGTCTTCACAAAGATCTGCATGC 1141 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||| || || ||||| || | ||| || ||||||| ||| | |||||| Sbjct 1124 CACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTC 1065 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || | ||||| | | ||||| || || || || ||||| ||||| | Sbjct 1064 AAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTG 1005 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || ||| ||| | ||| | ||| | | || ||||| | |||||| || || Sbjct 1004 AATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTT 945 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || ||||| ||||||||||||| Sbjct 944 GCCCGTTAGCGTCTTCACGAAGATCTGCATGC 913 >seq7195 Length=47515 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| || | || |||| |||| ||| | |||||| ||||| || | ||| || ||||| Sbjct 44812 TCCGCCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 44753 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || ||| ||||||||||| || || | ||||| | | ||||| || || || Sbjct 44752 CAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 44693 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 || ||||| ||||| | || ||| ||| ||| | ||| | ||| | | || || Sbjct 44692 GATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCAC 44633 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| | || || || || || || | || || || ||||||||||||| Sbjct 44632 GTCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCATGC 44583 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| ||| | |||||| ||||| || | ||| || ||||||| ||| Sbjct 44571 CGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCG 44512 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || | ||||| | | ||||| || || || || ||||| ||| Sbjct 44511 TCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTG 44452 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || ||| ||| ||| | ||| | ||| | | || ||||| | || || Sbjct 44451 TCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGGGTAATC 44392 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | ||| || || || |||||||| Sbjct 44391 GTCTTGCCCGTCAAAGTCTTGACGAAAATCTGCAT 44357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448203968136120