Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq7160 145 1e-30 seq13570 140 5e-29 seq9526 84.2 3e-12 >seq7160 Length=6336 Score = 145 bits (160), Expect = 1e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 338 CGCTAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTAT 397 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || |||||||| || ||||||||| |||| || | |||| || |||| Sbjct 398 CCGTCGTCTCGCACGTCGTGGCGGTGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 457 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| ||| |||| || | | ||| || || Sbjct 458 CCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTGACCTACACGGA 517 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || ||||||| |||| || || | || || || || Sbjct 518 GCACGCTCGCCGCAAAACCGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGCCAGGG 577 Query 16672 CCG 16674 || Sbjct 578 ACG 580 >seq13570 Length=2939 Score = 140 bits (154), Expect = 5e-29 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| |||| | ||| || || |||||||| || ||||||||||| || ||| Sbjct 1427 GCTAAGCGTCACCGCAAAGTTCTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCATC 1486 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||||||||| || || |||||| |||| || | |||| || |||| | Sbjct 1487 CGTCGTCTCGCTCGTCGTGGCGGGGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGACT 1546 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| ||||||| ||| || |||| || | || || || || Sbjct 1547 CGCGGCGTGCTCAAGGTCTTCCTTGAGAATGTCATCCGCGACTCGGTCACGTACACTGAA 1606 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || || || || || ||||||| |||| || || | ||||| || ||| Sbjct 1607 CACGCTCGCCGCAAAACCGTGACGGCCATGGACGTCGTGTACGCCCTCAAACGCCAGGGC 1666 Query 16673 CG 16674 || Sbjct 1667 CG 1668 >seq9526 Length=10131 Score = 84.2 bits (92), Expect = 3e-12 Identities = 165/244 (68%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||| || ||||||||| || | |||| || ||| | || ||||||| ||| || Sbjct 4078 GATACAATTCAAGGAATCTCCCGAGTATCTATTCGCCGTTTAGCCCGTCGTGCTGGGGTT 4019 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | |||| | | || || |||| |||||||| ||| ||||| | ||| ||| Sbjct 4018 GTACGTATGTCTGCACTCGTGTACGAAGCGATTCGTGCAGTTCTGAAGGTGTTCGTCAGT 3959 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | | | | || || ||| || ||| | ||| | || || || ||| || | || | Sbjct 3958 AACCTCGTGCAAGACGCTGTCGTCTAGTCTGAGTATGCCAATCGGAAGGCTCTTACTGCT 3899 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || | || |||||||||||||||| | |||| || ||| ||||| Sbjct 3898 ATGGATGTTATCCACGCTCTGAAACGTCAAGGCCGCACACTTTACGGATTTCAGGGTTAA 3839 Query 16700 TCTT 16703 | || Sbjct 3838 TGTT 3835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79060966982931