Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5234 176 6e-39 seq6779 161 1e-34 >seq5234 Length=8456 Score = 176 bits (194), Expect = 6e-39 Identities = 403/601 (67%), Gaps = 13/601 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| || ||||| ||||||||| | ||| || || ||||| || || ||||| Sbjct 5507 CAGGCGAAGTCCGTGTGCATACCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGT 5448 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| ||||||||||| |||||||| || ||||| ||| || || || |||||| Sbjct 5447 CCAGGCATGAGGCCACGCTTCTTAAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAG 5388 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-----ACCGGCG-CTGTCA 33477 || || || || |||||||| || | || | ||| || || || ||| Sbjct 5387 ATGCCCTCAACGGCAGCAAAAGCCAGTAGACGCTCCGGGTAGGAGGACACACGAGGGTC- 5329 Query 33478 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | | |||||| | ||||| | || ||||| | || || || || || || || ||| Sbjct 5328 -GCA-CCACTTGAGCGCCCAGTGTGCTTTCTTCGTGACGCACGGAATGGTCTCAATCGCA 5271 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 || |||| | || || | ||| || | || || || || | || || Sbjct 5270 CGCAACAGATGATCCTTCTCGATCGCATCCTTGATGTACGTGTCAATGAGCAGTGAGTAG 5211 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 | ||||| || ||||| || ||||| ||||| ||||||||||| |||| |||||| | Sbjct 5210 ACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAATCCGTAGAAGCATCGAGCCTCAGGC 5151 Query 33658 ATCTGTACTTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACTATTCCGTCACTGG 33715 | ||| ||||| ||| || |||| ||||| || || ||||| |||||||| |||| Sbjct 5150 ACCTGCACTTCATTACTGAA--GTTCATGGCCAAGTTCTCGTTCACGATTCCGTCGCTGG 5093 Query 33716 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33775 |||| || || || | || || || || || | |||| || || || ||| Sbjct 5092 CTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTAAGCTTGGTCC 5033 Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 |||| |||| || | | || | || || | ||||| || || ||||| |||| Sbjct 5032 AATCCTTGAGGTCGTGCACCAGGTCGATCTCCTCAGCAGTCCAGAAGGAGGCCTCGGCCT 4973 Query 33836 TTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGAT 33895 | || ||||| | ||| | || | | ||||| ||||| | ||| || | || |||| Sbjct 4972 TCTTGTACATCTGCCACACTTCGTGCTCCTGGATAGGGAAGAGAACGAAGCGGTTGGGAT 4913 Query 33896 T 33896 | Sbjct 4912 T 4912 >seq6779 Length=4860 Score = 161 bits (178), Expect = 1e-34 Identities = 409/619 (66%), Gaps = 13/619 (2%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 |||| || || |||||||| ||||| ||||| || | ||| || | ||||| || | Sbjct 657 ACATTAAGCACGCGAAATCCGTGTGCATGCCCTCATCACGACTGATCATCTCGTTTGAGA 716 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | | || || ||||| || || ||||| |||||||| || | |||| ||||| || | Sbjct 717 AGCTCAGACCAGGCATAAGACCGCGCTTCTTAAGCCAGAAAACGGAACAAAATGACCCCG 776 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-----ACCGGC 33470 |||||||||| ||||| |||||||| || || | || | |||| | || || | Sbjct 777 AAAAGAAGATACCTTCCACTGCAGCGAACGCTAGCAGACGCTCTGCGTACGACGACACAC 836 Query 33471 GC-TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33529 || |||| ||| ||| | ||||| | ||||||||| | ||||| || || || | Sbjct 837 GCGGGTCA---CACCATTTTAGCGCCCAGTTGGCCTTCTTCTGGACACATGGGATAGTCT 893 Query 33530 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33589 | || ||| | | | || ||| || || || | || || || || | | Sbjct 894 CGATAGCACGTAGCAAGTGGTCTTTCTCCACGGCGTCCTTGATGTATGTGTCAATAAGCA 953 Query 33590 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33649 | ||||| ||||| || || || || || || ||||| || |||||||| || | || Sbjct 954 GCGAATACACCTCCGAGTGGATATTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGAG 1013 Query 33650 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACTATTCC 33707 | || | ||||| ||||| ||| || |||| |||| || || || || || || Sbjct 1014 CTTCCGGTATCTGCACTTCATTACTGAA--GTTCATGGCCAGGTTCTCGTTGACGATACC 1071 Query 33708 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 33767 |||||| || || || ||||||| || | || || || | |||| ||| || Sbjct 1072 GTCACTAGCAGCGAAGAACGCCAGAACGTACTTGATGAAGTGACGCTCGTTGTCTGTGAG 1131 Query 33768 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 33827 ||| ||| || |||| ||| | | || | || || | ||||| || || || Sbjct 1132 TTTTGCCCAGTCGTTGAGATCGTGCACCAGRTCCAGCTCCTCGGCCGTCCAGAAGGAGGC 1191 Query 33828 CTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCT 33887 ||| ||||| || ||||| | ||| | ||| | | || || ||||| | || || | Sbjct 1192 CTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGAATGGGGAAGAGCACGAAGCG 1251 Query 33888 ATTTGGATTTGGTGCAAGG 33906 || ||||| || ||||| Sbjct 1252 GTTGGGATTCGGGACAAGG 1270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622825982261720