Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq10576 389 1e-102 seq12351 102 2e-16 >seq10576 Length=3682 Score = 389 bits (430), Expect = 1e-102 Identities = 1076/1632 (66%), Gaps = 41/1632 (3%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||||||| || || || | | ||| || || || | ||| ||| |||||||| Sbjct 2135 TTCACGCACGCGACCCCTACTCTCTTCAACGCCGGCACGCCACGTCCTCAGCTGTCTTCT 2076 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || | |||| |||| || || |||||||| |||| ||||| || ||| | Sbjct 2075 TGTTTCCTATTGGCAATGCAGGATGACTCGATCGAGGGCATCTACGACACGCTCAAGCAA 2016 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || |||||| || || || ||||| | || ||||| | || || Sbjct 2015 TGCGCGTGCATATCCAAGTGGGCGGGAGGTATTGGCATCAGTATGCACAACATCCGAGCC 1956 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| ||||| |||||||| || | ||| ||||| | | |||||||| ||| Sbjct 1955 ACCAACAGCTACATCCGCGGCACGAATGGCTCCTCCAATGGCATTATCCCCATGCTGCGT 1896 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||||| || | || || | || || |||||||| ||||| ||||||||||| | ||| Sbjct 1895 GTGTTTAACGACACGGCTCGCTATGTGGACCAGGGCGGAGGTAAGCGCAAAGGATCCTTT 1836 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 ||||| ||| | ||||| || || || | || ||||| || || || || || ||| Sbjct 1835 GCTATCTATTTGGAGCCATGGCACGCAGACGTGTTCGAGTTCCTGGATCTGCGCAAGAAC 1776 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| || || ||||| ||||||| || || ||||| |||| | Sbjct 1775 CACGGCAACGAGCTGCACCGCGCTCGTGACTTGTTCTACGCGCTCTGGGTGCCTGATCTC 1716 Query 363967 TTTATGAAGCGCGTGGAGGCA---GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGT 364023 || |||||| | |||||||| |||||| ||| || || || || ||||| | Sbjct 1715 TTCATGAAGAGAGTGGAGGCCAATGGTAAG---TGGAGTCTATTCTGTCCTAACGAAGCT 1659 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 || ||||| | ||| ||||| ||||| | || || || || |||||||| || | Sbjct 1658 CCTGGTCTCTACGAGTGCTGGGGAGACGAGTTTGAAGCGCTGTATGAAAAGTACGAGAAG 1599 Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 || ||| ||||| ||||| ||| ||| ||| |||| ||||| |||||| |||| || Sbjct 1598 GAAGGACGCGCTCGGAAGACCATTAACGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCG 1539 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 ||||| ||||| ||| |||| |||| | ||||| || | |||||||||||| ||| Sbjct 1538 CAGATCGAGACGGGAGTGCCCTTTATGCTCTACAAGGACGCAGCCAACCGCAAGTCGAAC 1479 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||| |||| || || || | |||||| |||| |||| | || || ||||| Sbjct 1478 CAGCAGAACCTGGGCACGATCCGCTCCAGCAACTTATGCTGCGAGGTGATGGAGTACACG 1419 Query 364264 GCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAA 364323 | ||||| ||| || || || ||| | ||||| | ||||| || ||| || | Sbjct 1418 TCGCCCGATGAGGTGGCAGTGTGCAACTTGGCGTCTGTGGCGCTGCCCAAGTTCGTGGAC 1359 Query 364324 GATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCT-ACTTGCAATCT 364382 || || || ||| ||||| | || ||||| || | | || | ||| |||| || Sbjct 1358 GAGGGCGTGTTCGACTACCAGAAACTGTATGAAGTGGTC-AAGGTGATCACTCGCAACCT 1300 Query 364383 CGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCG 364442 | ||||||| || ||| || || ||||| | | || || | || || ||||| Sbjct 1299 CAACAAGGTCATTGACGTCAACTACTATCCTGTAGCAGAGGCTCGGAAGTCCAACATGCG 1240 Query 364443 TCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGAT 364502 ||||||||| |||||| |||| || ||||| || ||||| | || || | | || Sbjct 1239 TCATCGCCCCATTGGTATTGGCGTCCAGGGTCTGGCTGATGCGTTCATCCTCATGAACTA 1180 Query 364503 GGCATTTGATTCGCCTG-ACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATT 364561 || || || || | | ||| ||| || || ||| | ||||| || || || || | Sbjct 1179 TGCGTTCGA-GAGCAAGCAAGCTAGTGAGCTCAACAAGAACATCTTCGAGACGATCTACT 1121 Query 364562 TTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATG 364621 ||||||||| | || || | || || ||| |||| || | Sbjct 1120 ACGCCGCAATGGAGACGTCCATGGAGATCGCCAAGGAATTGGGTCCGTACGAGACGTTCC 1061 Query 364622 AGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGC---CAT 364678 |||| |||||| |||| |||||||| || | ||| ||||| | ||| Sbjct 1060 AGGGCTCCCCTGCCAGTAAGGGCGTCTTCCAGTTCGACATGTGGGGCGTCACACCTGCAT 1001 Query 364679 CTGTCCGATGGAACTGG--GATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAA 364736 ||| | ||||||||| | || | | | | |||| | || | ||| |||||| Sbjct 1000 CTGGACTCTGGAACTGGGCGGCACTCAAGGAT--GACGTAATCAAATACGGTCTTCGCAA 943 Query 364737 CTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGA 364796 ||| || | || || ||||| ||||| || || || |||||||| || ||||| || Sbjct 942 CTCACTGCTGGTTGCACCGATGCCGACGGCGTCCACAGCTCAGATCCTGGGCAACAATGA 883 Query 364797 GTGCTTCGAACCGTTTACAAG--CAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTT 364854 || | |||| || ||||| | ||| | || ||||| || || |||| || ||| Sbjct 882 GTCCATCGAGCC--TTACACGTCCAACATGTACAACCGCCGTGTGCTGGCCGGCGAGTTT 825 Query 364855 CCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGC 364914 || | || || |||||||| | ||||| ||| || | || | || |||| | Sbjct 824 ACGATCGTCAACAAGTACCTGATGAAGGAGCTTATTGAGCTGGGAATCTG----GACACC 769 Query 364915 ATGAAGAACTATATCATCGCCGCTAA-------TGGTTCTGTGCAGAACATTCCAGG-AT 364966 | |||| || |||| | |||| ||| ||||||||||| || ||| Sbjct 768 A-GAAGTACGTAATCA--GATTCTAAATGACGGTGGATCTGTGCAGAA-GGTCAAGGCCA 713 Query 364967 TTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAA--CTCT 365024 ||||||| | | ||| | |||||||| || ||||| | || | ||| | | Sbjct 712 TTCCAGACCACGTCAAGGACAAGTACAAAACTGTGTGGGAGA--TCAAACAGAAGGCCGT 655 Query 365025 CATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATT 365084 | ||| || |||| || || || |||| ||||| ||||| ||||| | ||| | Sbjct 654 GCTGGATCTGTCGGCTGACCGTGGCGCTTACATCTGCCAGAGTCAGTCTCTGAACATCCA 595 Query 365085 CATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGG 365144 ||| || | || || | ||| || || |||||||| ||||||| ||||| || Sbjct 594 CATCGCTGACCCGACTATCAGCAAACTCACGTCCATGCACTTCTACGCCTGGAAGAAGGG 535 Query 365145 TCTTAAGACAGG 365156 || ||||| || Sbjct 534 ACTCAAGACCGG 523 >seq12351 Length=7116 Score = 102 bits (112), Expect = 2e-16 Identities = 341/522 (65%), Gaps = 9/522 (2%) Strand=Plus/Plus Query 111406 TTGCAGCAAAAA-ATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCA 111464 |||||||| ||| || | | || ||||| || |||||||| || || | | ||| | Sbjct 4775 TTGCAGCAGAAAGATATCCACATCTGGGACGGCAATGGATCGCGCGAGTACTTGGAT--A 4832 Query 111465 GTTG-GTCTTGTCGACAACG--AAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGG 111521 || | | || ||| | || ||| || || || ||||| |||||||| || || ||| Sbjct 4833 GTCGAGGACTGCCGA-ATCGGGAAGTTGGGGACCTTGGACCGGTTTACGGCTTCCAGTGG 4891 Query 111522 CGCCACTTTGGTGCAGACTACAAAACCATGCACGACTCATATGATTCACAGGGAACTGAT 111581 || ||||||||||| | |||| |||||| | || | || || || Sbjct 4892 CGTCACTTTGGTGCCAAGTACACGGACATGCATGCGGACTACACTGGCCAAGGGGTGGAC 4951 Query 111582 CAATTACAGAATGTCATTGATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTAT 111640 ||| | | | || ||| | ||| | | || || || ||| || || ||| | | Sbjct 4952 CAACTTGCGGAGGTGATTCA-CAAGCTGCGTACGAATCCGACTGACCGACGGATTGTCCT 5010 Query 111641 GAGTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTG 111700 | || |||||||| || | | | |||||||| ||||| || || | | || Sbjct 5011 GTCGGCGTGGAACCCGGCTGATCTCAACGAGATGGCACTGCCACCTTGCCACATGTTCTG 5070 Query 111701 CCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATAT 111760 |||||| || || ||||||| | || ||||| ||||| ||||| || || || || Sbjct 5071 CCAGTTCTACGTGGCCGACGGGGAATTATCGTGCCAGATGTACCAGCGTTCGGCCGACAT 5130 Query 111761 TGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || ||||| || || || || || || || ||||| || || || | | | || || Sbjct 5131 GGGACTTGGCGTGCCATTCAACATCGCCAGCTACGCGCTGCTGACGCGGCTTGTTGCGCA 5190 Query 111821 TTTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACAC 111880 | || || ||||| || || ||||| ||||||||||| || ||||| || || Sbjct 5191 AGTGACTGGACTGAAACCTGGCGAGTTCATCCACGTTATCGGTGACGCGCACGTGTATCT 5250 Query 111881 AAACCACATTGATGCACTTAAAACACAGTTGAAGCGCAAACC 111922 ||||||| | || ||||| | | ||| | | ||| | ||| Sbjct 5251 AAACCACGTGGAACCACTTCAGAAGCAGCTCACGCGTACACC 5292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303093643273394