Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq10576 212 6e-50 seq7887 152 5e-32 seq7195 141 9e-29 seq5421 134 1e-26 seq9710 114 1e-20 seq13260 91.5 1e-13 >seq10576 Length=3682 Score = 212 bits (234), Expect = 6e-50 Identities = 938/1458 (64%), Gaps = 44/1458 (3%) Strand=Plus/Plus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 ||||| ||||||| | |||||||||||||| |||||| || |||| ||| ||||| Sbjct 807 GTACTTGTTGACGATCGTAAACTCGCCGGCCAGCACACGGCGGTTGTACATGTTGGACGT 866 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 | | || || | ||||| || ||||||||||| ||||| || | || || ||||| Sbjct 867 GTAAGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCTGTGGACGCCGTCGGCATCGG 926 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCA 145230 || |||| | ||| ||||| || |||| || | | ||| ||||| || | |||| Sbjct 927 TGCAACCAGCAGTGAGTTGCGAAGACCGTATTTGATTACGTCATCCTTGAGTGCCGCCCA 986 Query 145231 ATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCT 145287 | ||| || || | || | ||| ||||||||||| |||| || | ||||| || Sbjct 987 GTTCCAGAGTCCAGATGCAGGTGTGACGCCCCACATGTCGAACTGGAAGACGCCCTTACT 1046 Query 145288 GGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT-TTTGGCGAGCTCGCAACTCG 145346 ||| ||| ||| || || | || || | ||||| | ||||||| ||| || Sbjct 1047 GGCAGGGGAGCCCTGGAACG-TCTCGTACGGACCCAATTCCTTGGCGATCTCCATGGACG 1105 Query 145347 CCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCAT 145406 ||||| ||| || | || || |||||| || | | |||||||| | |||| | Sbjct 1106 TCTCCATTGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCACTAGCTTGCT 1165 Query 145407 CGCTCTCGTACGGCAT-GCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACG 145465 ||||||| || |||| | || || | || ||||| || || ||||| | || | Sbjct 1166 TGCTCTCGAAC-GCATAGTTCATGAGGATGAACGCATCAGCCAGACCCTGGACGCCAATA 1224 Query 145466 CCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATTACG 145524 || ||||| ||||| ||||||| | ||| ||| | | |||||| | | | || Sbjct 1225 CCAATGGGGCGATGACGCATGTTGGACTTCCGAGCCTCTGCTACAGGATAGTAGTTGAC- 1283 Query 145525 GTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAA 145584 ||| || | || || | ||| || | ||||| | | || || | | Sbjct 1284 GTCAATGACCTTGTTGAGGTTGCGAGTGATCACCTTGACCACTTCATACAGTTTCTGGTA 1343 Query 145585 GTCAAACCGAGCCTCGTCAACGACC--ACACAGCTATTGACGGCGATCGACGCCAAATTA 145642 ||| ||| ||||||| |||| | |||| || | |||||||| || Sbjct 1344 GTCGAACACGCCCTCGTCCACGAACTTGGGCAGC--------GCCACAGACGCCAAGTTG 1395 Query 145643 CAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACA 145701 || |||||| ||| || |||| || |||| | | | |||| ||| || ||||| | Sbjct 1396 CACACTGCCACCTCATCGGGCGACG-TGTACTCCATCACCTCGCAGCATAAGTTGCTGGA 1454 Query 145702 TTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCAT 145761 ||| || ||||| || ||||| || || | |||| ||||||||||||||||| Sbjct 1455 GCGGATCGTGCCCAGGTTCTGCTGGTTCGACTTGCGGTTGGCTGCGTCCTTGTAGAGCAT 1514 Query 145762 GTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTGCAAGTCCTGCGCA 145819 | || | || ||||| | ||||| |||| ||| ||| || | ||| || Sbjct 1515 AAAGGGCACTCCCGTCTCGATCTGCGCGTCCAGGATGGCGAAC--CACAGCTGCTGGGCG 1572 Query 145820 CGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCG 145879 | || | | ||| || || | ||||| || || ||| | |||||| || Sbjct 1573 TTAATGGTCTTCCGAGCGCGTCCTTCCTTCTCGTACTTTTCATACAGCGCTTCAAACTCG 1632 Query 145880 GAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCG 145939 || |||| ||| | || || ||| | ||| ||||| | || ||| || Sbjct 1633 TCTCCCCAGCACTCGTAGAGACCAGGAGCTTCGTTAGGACAGAATAGACTCCACTTACCA 1692 Query 145940 TTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT--CGC 145997 ||||| | || | || ||| || | ||| |||||||| |||||||| | ||||| || Sbjct 1693 TTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAGAACAAGTCACGA 1752 Query 145998 GCGCTTTGCAATCCTCAGCACCCATGTTTC--GCTTCAAATTAAGCACACT-ATAGATGT 146054 |||| |||| ||| | || || ||| || || || || | ||| | | || Sbjct 1753 GCGCGGTGCA--GCTC-GTTGCCGTGGTTCTTGC-GCAGATCCAGGA-ACTCGAACACGT 1807 Query 146055 CCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTGGT 146111 | |||||||| || || | ||||| || | || |||||| || || || ||||||| Sbjct 1808 CTGCGTGCCATGGCTCCAAATAGATAGCAAAGGATCCTTTGCGCTTACCTCCGCCCTGGT 1867 Query 146112 CCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGC 146171 |||| | || || ||| |||||| || |||| |||||| | ||| ||| || Sbjct 1868 CCACATAGCGAGCCGTGTCGTTAAACACACGCAGCATGGGGATAATGCCATTGGAGGAGC 1927 Query 146172 CGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGAC 146231 | ||||| | || | || | || || | | || | | | | ||| | || Sbjct 1928 CATTCGTGCCGCGGATGTAGCTGTTGGTGGCTCGGATGTTGTGCATACTGATGCCAATAC 1987 Query 146232 CGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAAT-- 146289 | || | |||||||||| ||||| | |||||| ||||||||||| || || Sbjct 1988 CTCCCGCCCACTTGGATATGCACGCGCATTGCTTGAGCGTGTCGTAGATGCCCTCGATCG 2047 Query 146290 -GCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCG 146348 | ||| || | | |||| | || || || || ||| ||| | ||||| || | Sbjct 2048 AGTCATC-CTGC-ATTGCC-AATAGGAAACAAGAAGACAGCTGAGGACGTGGCGTGCCGG 2104 Query 146349 CCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTT 146408 | ||| | || ||| |||||||||| || | ||| | ||| | | ||||| | Sbjct 2105 CGTTGAAGAGAGTAGGGGTCGCGTGCGTGAAGAACTTTTGCGACATGAGCTCGTACGTCT 2164 Query 146409 CGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTT 146468 ||| ||| | || |||||| || ||||||| || ||||||| | ||| || | Sbjct 2165 CGAGCGCGGCCTGGATGTCGCTCTTGTGGATGCCCAGCGCCACGCGCAGAATCATCTGCT 2224 Query 146469 GGGGCCGCTCCGCCACTT 146486 | ||||||||| |||||| Sbjct 2225 GCGGCCGCTCCACCACTT 2242 >seq7887 Length=10481 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | |||||||||||| || |||||||| || | Sbjct 1225 CCACCACGCAGACGCAGCACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 1166 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 1165 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 1106 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| |||||||||||||| | || | | || | | ||| | | Sbjct 1105 ATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACG 1046 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || |||||||||||||| Sbjct 1045 TCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 999 >seq7195 Length=47515 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| |||||| || | || | || |||||||| || |||||||| ||||| Sbjct 44584 GCCACCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 44525 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| |||||||| || ||| |||| | |||||||||||| || || Sbjct 44524 CAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 44465 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| || ||||| | | || | | || | | ||| | Sbjct 44464 GATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCAC 44405 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| | ||||| || || || || | ||| || |||||||||||||| Sbjct 44404 GTCCAGGGTAATCGTCTTGCCCGTCAAAGTCTTGACGAAAATCTGCAT 44357 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| |||||| || | || | || |||||||| || |||||||| |||||| Sbjct 44811 CCGCCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 44752 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| |||||||| || ||| |||| | |||||||||||| || ||| Sbjct 44751 AGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 44692 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | | || | | || | | ||| | | Sbjct 44691 ATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACG 44632 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||||| || || || || | || || ||||| ||||||||| Sbjct 44631 TCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCATG 44584 >seq5421 Length=2020 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| ||||| | || | || |||||||| || |||||||| ||||| Sbjct 1142 GCCACCACGCAGACGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGCT 1083 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 1082 CAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCGG 1023 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| || |||||||| | | || | | || | | ||| | Sbjct 1022 GATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 963 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||||| || | || || || ||||| || || ||||| ||||||||| Sbjct 962 GTCGAGCGTGATCGTCTTGCCCGTTAGCGTCTTCACGAAGATCTGCATG 914 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| |||||| || | || | || |||||||| || ||||||||||| || Sbjct 914 GCCACCACGCAGACGCAGTACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAATCACT 855 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| ||| | || | ||||||||||| || || Sbjct 854 CAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 795 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| || |||||||| | | || | | || | | ||| | Sbjct 794 GATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 735 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || | || || || ||||| || || |||||||||||||| Sbjct 734 GTCGAGCGTGATCGTCTTGCCCGTTAGCGTCTTCACGAAAATCTGCAT 687 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||| ||||| | || | || |||||||| || |||||||| |||||| Sbjct 1369 CCGCCGCGAAGACGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTC 1310 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 1309 AGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCGGG 1250 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || |||||||| | | || | | || | | ||| | | Sbjct 1249 ATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 1190 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | || || || || || || || || || ||||||||| Sbjct 1189 TCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 1142 >seq9710 Length=10376 Score = 114 bits (126), Expect = 1e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 ||||||| |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 864 CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 923 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||| || |||||||| || ||||| |||||||||||||| | | Sbjct 924 TCAGACGCTGCTGGTCAGGCGGGATTCCYTCCTTGTCCTGGATTTTCTGCTTGACATTGT 983 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | |||| | ||| | ||| | || | ||| || || || | || || || | Sbjct 984 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 1043 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 1044 AGATCTGCATGA 1055 >seq13260 Length=2999 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | |||||| || | || | || |||||||| || |||||||| || ||| Sbjct 128 CCGCCGCGAAGACGCAGTACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTC 69 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| | || | ||||||||||| || ||| Sbjct 68 AGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 9 Query 131128 ATTCCTTC 131135 || ||||| Sbjct 8 ATGCCTTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471920952209280