Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq15168 113 3e-20 seq14928 98.7 7e-16 seq14332 91.5 1e-13 seq7195 87.8 1e-12 >seq15168 Length=1709 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1019 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 960 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 959 ACCAATATTTAGCTTTA 943 >seq14928 Length=2953 Score = 98.7 bits (108), Expect = 7e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 19950 TCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGT 20009 ||| |||||| ||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 615 TCTTTTCAAATTTCTTTTCATCTTTCCCTCACAGTACTTGTTCGCTATCGGTCTCGCACC 556 Query 20010 AATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 555 AATATTTAGCTTTA 542 >seq14332 Length=5554 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| |||||||| ||| |||||| || |||||| | Sbjct 3628 AAGCCCGTTCCCTTGGCTGTGGGCTCGCTAGACGGTAAATAGGGACAGTGGGAATCTCAT 3687 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| || ||||| |||| ||||| || |||||||| Sbjct 3688 TAACCCATTCATACGCGCCACTAGTTGGATGACGA 3722 >seq7195 Length=47515 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 || || || | || ||||| |||| |||||||| |||||| || || ||||| || Sbjct 44814 TTTCCGCCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCG 44755 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || || |||| || | || || || || || || || || || || || | Sbjct 44754 CTCAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGC 44695 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| |||||| |||||| || ||||||||||| || | || | || | || Sbjct 44694 GGGATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCC 44635 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || | ||||| || || ||||||||||| || ||||| ||||||||| Sbjct 44634 ACGTCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCATG 44584 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||||| |||| |||||||| |||||| || || ||||| || | Sbjct 44583 CCACCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 44524 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || || || || || || || || || || | ||| Sbjct 44523 AGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 44464 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| || ||||||||||| || | || | || | || || Sbjct 44463 ATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACG 44404 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | ||||| || || |||||||| || || ||||| |||||||| || Sbjct 44403 TCCAGGGTAATCGTCTTGCCCGTCAAAGTCTTGACGAAAATCTGCATCTT 44354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334883652875177