Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value seq10399 127 1e-24 >seq10399 Length=21380 Score = 127 bits (140), Expect = 1e-24 Identities = 389/592 (66%), Gaps = 22/592 (4%) Strand=Plus/Plus Query 65459 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGTCTCCACGCG 65518 || |||||||| ||||||||||| || || || ||| | || || | || || Sbjct 7210 CGTGTGGTGGAGATCTACGGCCCCGAGAGCTCCGGCAAGACGACGCT--GGCTTTGAGCT 7267 Query 65519 G--TGGCCAATGCGCAGAAGGCCG---GTGGCAACGCCGCCTACATCGACGCTGAGCACT 65573 | | || | || |||||| ||| |||| | |||| ||||| || |||||| Sbjct 7268 GCATCGCTGAGGCTCAGAAGACCGAGGGTGGAGTCTGTGCCTTTATCGATGCAGAGCACG 7327 Query 65574 CCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTG-GTGGTT 65632 | | ||| | | ||||||||||| || || ||||| | ||| ||| || || Sbjct 7328 CTATTGACGCCCACTACGCCAAGGCTCTGGGGGTGGATATTGACG-CCTTGTATGTCTCG 7386 Query 65633 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 65692 ||||| ||| | || ||| | || |||||||||| ||| ||| || ||||| || Sbjct 7387 CAGCCAGACTCCGGGGAGGAAGCTCTGGAGATCGCAGACACGCTCATCCGATCTGG--AG 7444 Query 65693 CTGTCCA--TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAG 65750 |||| | |||| || | ||| |||||| || ||||||||||| || |||||||||| Sbjct 7445 CTGTAGACCTCGTGGTGCTGGACAGTGTGGCAGCTCTGGTGCCGCGTGCGGAGCTCGAAG 7504 Query 65751 GCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCA 65810 | || || || ||| || | | ||||| ||||| || ||| ||||| |||| | Sbjct 7505 GTGAAATGGGAGACCAGCAGATTGCTCTGCAGGCGCGACTTATGAGTCAGGCTCTGCGTA 7564 Query 65811 AGCTCACTGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGC 65867 || | || || | | |||| |||| ||| | | ||| | |||||| | | Sbjct 7565 AGTTGACCGGGTCATTGTCCAAGTCCAACTGCACCATTA---TCTTCCTGAACCAGATCC 7621 Query 65868 GCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTT 65927 || |||| | |||| | | || || | |||| || |||| || | ||| | Sbjct 7622 GCCAGAAAGTGGGCATCAT---CTTTGGATCACCCGAGGTGACGTCGGGTGGTACGGCGT 7678 Query 65928 TGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 65987 | | | ||||| ||||| || ||||| |||| || | | || |||||||| | Sbjct 7679 TACGCTATTACGCGTCAGTGCGGTTGGATATCCGCCGTAAGACGGCCATCAAGGAAGGTG 7738 Query 65988 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGC 66039 || ||| ||| |||||| || ||| || || | |||||||||| |||| Sbjct 7739 ATCAGGTTGTTGGCAACGAGACTGTGGTCAAAGTGGCCAAGAACAAGTTGGC 7790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238175604079828