Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6779 165 1e-35 seq5234 158 2e-33 seq10576 105 8e-18 >seq6779 Length=4860 Score = 165 bits (182), Expect = 1e-35 Identities = 404/609 (66%), Gaps = 13/609 (2%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||| || || |||||||| ||| | ||||| || | ||| || | ||||| || | Sbjct 657 ACATTAAGCACGCGAAATCCGTGTGCATGCCCTCATCACGACTGATCATCTCGTTTGAGA 716 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772 | | || || ||||| || || ||||| |||||||| || | ||| |||||| || | Sbjct 717 AGCTCAGACCAGGCATAAGACCGCGCTTCTTAAGCCAGAAAACGGAACAAAATGACCCCG 776 Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-----ACCGGC 32827 ||||||| || ||||| ||||| || || || | || | |||| | || || | Sbjct 777 AAAAGAAGATACCTTCCACTGCAGCGAACGCTAGCAGACGCTCTGCGTACGACGACACAC 836 Query 32828 GCTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 32886 || | ||| ||| ||| | ||||| | ||||||||| | ||||| || || |||| Sbjct 837 GCGGGTCACA---CCATTTTAGCGCCCAGTTGGCCTTCTTCTGGACACATGGGATAGTCT 893 Query 32887 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 32946 | |||||| | | | || ||| || || || | ||||| ||||| | | Sbjct 894 CGATAGCACGTAGCAAGTGGTCTTTCTCCACGGCGTCCTTGATGTATGTGTCAATAAGCA 953 Query 32947 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAG 33006 | ||||| ||||| || || || || || || || || || ||||||||||| | || Sbjct 954 GCGAATACACCTCCGAGTGGATATTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGAG 1013 Query 33007 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCC 33064 | || | ||||| ||||| ||| || |||| || | || || || || || || Sbjct 1014 CTTCCGGTATCTGCACTTCATTACTGAA--GTTCATGGCCAGGTTCTCGTTGACGATACC 1071 Query 33065 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 33124 |||||| || || || ||||||| || | || || || | |||| ||| || Sbjct 1072 GTCACTAGCAGCGAAGAACGCCAGAACGTACTTGATGAAGTGACGCTCGTTGTCTGTGAG 1131 Query 33125 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 33184 ||| ||| || |||| ||| | | |||| || || | ||||| || || || Sbjct 1132 TTTTGCCCAGTCGTTGAGATCGTGCACCAGRTCCAGCTCCTCGGCCGTCCAGAAGGAGGC 1191 Query 33185 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 33244 ||| ||||| || ||||| | ||| | ||| || | ||||| || || | || || | Sbjct 1192 CTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGAATGGGGAAGAGCACGAAGCG 1251 Query 33245 ATTTGGATT 33253 || ||||| Sbjct 1252 GTTGGGATT 1260 >seq5234 Length=8456 Score = 158 bits (174), Expect = 2e-33 Identities = 412/620 (66%), Gaps = 15/620 (2%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| || ||| | ||||||||| | ||| || | ||||| || || ||||| Sbjct 5507 CAGGCGAAGTCCGTGTGCATACCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGT 5448 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 || ||||| ||||||||||| |||||||| || ||||| ||| || || || || ||||| Sbjct 5447 CCAGGCATGAGGCCACGCTTCTTAAGCCAGAAGATGGA-GCAGAAGGAACCCGAGAAGAA 5389 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-----CGCTG-TC 32833 || || || || || ||||| || | || | ||| || || || | || Sbjct 5388 GATGCCCTCAACGGCAGCAAAAGCCAGTAGACGCTCCGGGTAGGAGGACACACGAGGGTC 5329 Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 | | |||||| | ||||| | || ||||| | || || || || ||||| || || Sbjct 5328 --GCA-CCACTTGAGCGCCCAGTGTGCTTTCTTCGTGACGCACGGAATGGTCTCAATCGC 5272 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 | || |||| | || || | ||| || | || || ||||| | || || Sbjct 5271 ACGCAACAGATGATCCTTCTCGATCGCATCCTTGATGTACGTGTCAATGAGCAGTGAGTA 5212 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 | ||||| || ||||| || ||||| || || |||||||||||||||| |||||| | Sbjct 5211 GACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAATCCGTAGAAGCATCGAGCCTCAGG 5152 Query 33014 AATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCGTCACTG 33071 | ||| ||||| ||| || |||| || || || || ||||| |||||||| ||| Sbjct 5151 CACCTGCACTTCATTACTGAA--GTTCATGGCCAAGTTCTCGTTCACGATTCCGTCGCTG 5094 Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33131 ||||| || || || | || || || || || | |||| || || || || Sbjct 5093 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTAAGCTTGGTC 5034 Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 ||||| |||| || | | || | || || | ||||| || || ||||| ||| Sbjct 5033 CAATCCTTGAGGTCGTGCACCAGGTCGATCTCCTCAGCAGTCCAGAAGGAGGCCTCGGCC 4974 Query 33192 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 33251 || || ||||| | ||| | || || | || || || || | ||| || | || ||| Sbjct 4973 TTCTTGTACATCTGCCACACTTCGTGCTCCTGGATAGGGAAGAGAACGAAGCGGTTGGGA 4914 Query 33252 TTTTTTGCAAGGATTGGTTC 33271 || | | |||| ||||| Sbjct 4913 TTCTCCACGAGGAACGGTTC 4894 >seq10576 Length=3682 Score = 105 bits (116), Expect = 8e-18 Identities = 780/1249 (62%), Gaps = 14/1249 (1%) Strand=Plus/Plus Query 62473 CGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTC 62532 || ||| | ||| |||| || || || |||||||| ||||| || || || |||| Sbjct 1104 CGTCTCCATTGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCACTAGCTTG 1163 Query 62533 CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAAT 62592 | ||| || || | ||| || | ||| || ||||| || || | || || || ||||| Sbjct 1164 CTTGCTCTCGAACGCATAGTTCATGAGGATGAACGCATCAGCCAGACCCTGGACGCCAAT 1223 Query 62593 ACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAAT 62652 ||| || || | ||| | | | || || | ||| |||| | |||||| || || | Sbjct 1224 ACCAATGGGGCGATGACGCATGTTGGACTTCCGAGCCTCTGCTACAGGATAGTAGTTGAC 1283 Query 62653 ATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAA 62712 || || | || ||||| || | || || |||||||| || | |||||| | | Sbjct 1284 GTCAATGACCTTGTTGAGGTTGCGAGTGATCACCTTGACCACTTCATACAGTTTCTGGTA 1343 Query 62713 ATCAAAT-CGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGG 62771 || || ||||| || || ||| || || || ||||| |||| || || || | Sbjct 1344 GTCGAACACGCCC-TCGTCCACGAACTTGGGCAGCGCCACAGACGCCAAGTTGCACACTG 1402 Query 62772 CTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGG 62831 | ||||||| | || || | || | ||| ||| | || || | ||| | Sbjct 1403 CCACCTCATCGGGCGACGTGTACTCCATCACCTCGCAGCATAAGTTGCTGGAGCGGATCG 1462 Query 62832 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAG 62891 | || | || || || || ||| ||| || ||||| || || || || || Sbjct 1463 TGCCCAGGTTCTGCTGGTTCGACTTGCGGTTGGCTGCGTCCTTGTAGAGCATAAAGGGCA 1522 Query 62892 TACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATA 62950 || || || ||||| | || | || || ||| | | || | || || || | Sbjct 1523 CTCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGG-GCGTTAATGGTC 1581 Query 62951 GATTTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCC 63008 || | | | | ||| | ||||| | ||||| ||| ||||||||||||| Sbjct 1582 --TTCCGAGCGCGTCCTTCCTTCTCGTACTTTTCATACAGCGCTTCAAACTCGTCTCCCC 1639 Query 63009 AAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 63068 | | || || |||||| ||| | ||||| | | ||||| || | ||| Sbjct 1640 AGCACTCGTAGAGACCAGGAGCTTCGTTAGGACAGAATAGACTCCACTTACCATTGGCCT 1699 Query 63069 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTA 63127 ||||| ||||| ||||||||||| | ||| || || || || || || | | | Sbjct 1700 CCACTCTCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAGAACAAG-TCACGAGCGCGG 1758 Query 63128 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 63187 || |||||| || ||||| ||||| |||||| | | | || | ||||| Sbjct 1759 TGCAGCTCGTTGCCGTGGTTCTTGCGCAGATCCAGGAACTCGAACACGTCTGCGTGCCAT 1818 Query 63188 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 63247 || ||||| || || || | ||| || || ||| ||||| || | || | | Sbjct 1819 GGCTCCAAATAGATAGCAAAGGATCCTTTGCGCTTACCTCCGCCCTGGTCCACATAGCGA 1878 Query 63248 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCT 63307 || |||| ||| | || | || ||| || ||||| |||||||| | ||||| || || Sbjct 1879 GCCGTGTCGTTAAACACACGCAGCATGGGGATAATGCCATTGGAGGAGCCATTCGTGCCG 1938 Query 63308 GAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCA 63365 ||| ||||| |||| || || | | | | |||| || || || || ||| Sbjct 1939 CGGATGTAGCTGTTGGTGGCTCGGATGTTGTGCATACTGAT--GCCAATACCTCCCGCCC 1996 Query 63366 TTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCA 63425 || || || | |||||| | || | ||| || ||||||||||| || |||||| Sbjct 1997 ACTTGGATATGCACGCGCATTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCATCCT 2056 Query 63426 TCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGG 63485 ||| | ||| ||||| ||||| || |||| || || || || || | | Sbjct 2057 GCATTGCCAATAGGAAACAAGAAGACAGCTGAGGACGTGGCGTGCCGGCGTTGAAGAGAG 2116 Query 63486 TAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGT 63545 |||| | ||||| || || | |||| || | || | ||||||||| | || | | Sbjct 2117 TAGGGGTCGCGTGCGTGAAGAACTTTTGCGACATGAGCTCGTACGTCTCGAGCGCGGCCT 2176 Query 63546 CTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63605 || || | | || || || | || || |||| | ||| ||||| || | || | Sbjct 2177 GGATGTCGCTCTTGTGGATGCCCAGCGCCACGCGCAGAATCATCTGCTGCGGCCGCTCCA 2236 Query 63606 CGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63665 | | ||| || | || | |||| | || | || || || ||||| |||| Sbjct 2237 CCACTTTGCCATTCACGCGGAAGAGGTAGCCTCGCTCGAGCGTCTTGAAGCCAAAGTAGT 2296 Query 63666 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 ||| ||||| || |||| || || |||||||||| | ||||| Sbjct 2297 CGTACTCGAAGTCGCGGTCGTGGATGATGGCCGAGTTGAGCTCGTCCTT 2345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633508703133200