Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq6779 143 3e-29 >seq6779 Length=4860 Score = 143 bits (158), Expect = 3e-29 Identities = 401/611 (66%), Gaps = 10/611 (2%) Strand=Plus/Plus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||||||||||||| || || || || | || || || || |||| ||| || Sbjct 655 GTACATTAAGCACGCGAAATCCGTGTGCATGCCCTCATCACGACTGATCATCTCGTTTGA 714 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 ||| | | ||| || | || || || ||||| ||||| || | ||| ||||| ||| Sbjct 715 GAAGCTCAGACCAGGCATAAGACCGCGCTTCTTAAGCCAGAAAACGGAA-CAAAATGACC 773 Query 93202 A-GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 ||||| || ||||||||||| || || || || | | ||| || || | | | Sbjct 774 CCGAAAAGAAGATACCTTCCACTGCAGCGAACGCTAGCAGACGCTCTGCGTAC---GACG 830 Query 93261 AATTACTGCTGATC----CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGT 93316 | || || | || ||||||| ||||| | ||| || |||| | ||| || | Sbjct 831 ACACAC-GCGGGTCACACCATTTTAGCGCCCAGTTGGCCTTCTTCTGGACACATGGGATA 889 Query 93317 GTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATT 93376 || |||||||| | | || ||| ||| | | || |||||||| || || Sbjct 890 GTCTCGATAGCACGTAGCAAGTGGTCTTTCTCCACGGCGTCCTTGATGTATGTGTCAATA 949 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 | ||| ||||||| || || |||| |||||| || || || ||||| |||||||| || Sbjct 950 AGCAGCGAATACACCTCCGAGTGGATATTCTCGATAGCGATCTGGAAGCCGTAGAAGCAG 1009 Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATA 93496 | |||||||| ||||||||||| | | || || | || || || ||||| ||| Sbjct 1010 CGAGCTTCCGGTATCTGCACTTCATTACTGAAGTTCATGGCCAGGTTCTCGTTGACGATA 1069 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTA 93556 || || || || || || |||| | | ||| || || || ||| | ||| | Sbjct 1070 CCGTCACTAGCAGCGAAGAACGCCAGAACGTACTTGATGAAGTGACGCTCGTTGTCTGTG 1129 Query 93557 AGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 || || |||| ||| ||||| | || || | || ||| | ||||| || || Sbjct 1130 AGTTTTGCCCAGTCGTTGAGATCGTGCACCAGRTCCAGCTCCTCGGCCGTCCAGAAGGAG 1189 Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAA 93676 || || || || |||||||| | ||| | ||| || | ||||| || || | || || Sbjct 1190 GCCTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGAATGGGGAAGAGCACGAAG 1249 Query 93677 CGATTAGGGTT 93687 || || || || Sbjct 1250 CGGTTGGGATT 1260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556752441849080