Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq7887 111 1e-19 seq5421 91.5 1e-13 >seq7887 Length=10481 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || || || | || || || || |||| || || ||||| | Sbjct 996 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCG 1055 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | | ||| || |||| || ||||| || ||||||||||| || || || || Sbjct 1056 TCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGAC 1115 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | ||||| |||||| | || || ||| Sbjct 1116 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTAC 1175 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || ||| | || | || |||| |||| || ||| Sbjct 1176 AACATCCAGAAGGAGTCGACCCTGCACCTTGTGCTGCGTCTGCGTGGTGGT 1226 >seq5421 Length=2020 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || |||| || || ||| |||| || || ||||| | Sbjct 684 AAGATGCAGATTTTCGTGAAGACGCTAACGGGCAAGACGATCACGCTCGACGTGGAGCCG 743 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | ||| | | || || || ||||| |||||||| || || || || || Sbjct 744 TCGGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCGCCTGAC 803 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || || || ||||| ||| | |||||| |||||| | |||||| Sbjct 804 CAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACACTGAGTGATTAC 863 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || || || || || Sbjct 864 AACATCCAGAAGGAGTCTAC 883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419648368023355