Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq7786 190 4e-43 seq5234 143 5e-29 seq4521 102 2e-16 seq1792 102 2e-16 seq15494 84.2 4e-11 seq15271 84.2 4e-11 seq9443 84.2 4e-11 >seq7786 Length=29839 Score = 190 bits (210), Expect = 4e-43 Identities = 665/1019 (65%), Gaps = 33/1019 (3%) Strand=Plus/Plus Query 279351 GATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACC 279410 || ||||| ||||||| |||||||| || || ||||| | ||||||||| ||| | Sbjct 20042 GACCTGTGCAACTGTGAGTTCTCGCTTGCCTACGGTGGTATGATTCTGCTGAACAACGCT 20101 Query 279411 CGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAG 279470 || || | ||||||||||| |||| || ||||| ||||||||| || |||||| Sbjct 20102 CGTCTTCGCCTCAAGCGTGGCCACCGTTACGGTCTGTGCGGTCCCAACGGTTGTGGTAAG 20161 Query 279471 AGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAAC-GCATCTGA 279529 || || ||||||||||| | ||||| ||||| || || || || | | || | || Sbjct 20162 TCGACGCTGATGCGCGCCATCTCGAACGGCCAGCTCGAGGGCTTCCCCAGCCGCGAC-GA 20220 Query 279530 GGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGTT 279589 | | | ||| |||| || |||||| || | | | || | || | ||| | Sbjct 20221 GCTCAAGACTGTGTTCGTTGAGCACAACCTGCAGGCTTCGGAGGCTGAGCTGTCCGTGGT 20280 Query 279590 CGACTTCCTAACGTCT-GACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCATCC 279648 |||||| | ||| | | || ||| || | | || | | |||| || Sbjct 20281 GGACTTCAT----TCTTGTCGATGAGGACCTGAAGAACACGCCCCGCAAGGAGGTCGAGG 20336 Query 279649 AGAAACTGGAGGCCAATGGTTTTGATGAAAGA-ATGCGTAATCTGCCAGTAGGTTCTCTG 279707 | | || | | | ||| || | || |||| | | || || |||| Sbjct 20337 ACACCCTTGCCGGCGTTGGCTTC-ACCCCCGAGATGCAGGCCCAGGGTGTGGGCACTCTT 20395 Query 279708 TCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTC 279767 |||||||||||||||||||| |||| || | || ||||| || | | ||||| | Sbjct 20396 TCGGGTGGTTGGAAGATGAAACTGGAGCTGGCCCGTGCCATGCTGCAGAAGGCCGACATT 20455 Query 279768 CTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCC 279827 || || ||||||||||| || |||||| |||| || ||||| || ||||| | | | Sbjct 20456 CTGCTTCTTGATGAGCCCACGAACCACTTGGATGTCAAGAACGTTGCGTGGCTGGAGAAC 20515 Query 279828 TACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTA 279887 ||||| || || |||| ||| || ||||| |||| || || ||||||||||||||||| Sbjct 20516 TACCTGACGAGCCTGACGAACGTGACTTCCATCATGGTGTCGCACGACTCTGGCTTCCTC 20575 Query 279888 GATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAGCAC 279944 || | || || | |||||||||||| ||| | || || ||| ||| |||| Sbjct 20576 GACACTGTCTGTACCAACATCATTCACTACGAGACCCGTAAGCTCAAGATCTACAAG--- 20632 Query 279945 ATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTG 280004 || |||||||| || |||| || || ||||| |||||||| || || Sbjct 20633 ---GGTAACCTGTCCAAGTTTGTGGAGCAGAAGCCCGAGGCCAAGGCCTACTACGAGCTC 20689 Query 280005 AAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC-ACATC 280063 || | | || ||||| |||||| ||||| || || || | | |||| | | | Sbjct 20690 GAGTCGGAGAACGTCAAGTTCATATTCCCGGAGCCTGGTTTCCTTGCCGACATCAAGAAC 20749 Query 280064 AAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCCAA 280123 || || || | ||||| || | || | || || | |||||| Sbjct 20750 AAGGGTAAGC-CCATCATTCGTCTGACAAACTGTTCGTACCAGTACCCGGGTACCCCCAA 20808 Query 280124 --CATC-TTCAGCAGTGTCAACTCGCAGGT---TTCTAT-GAACTCACGGATTGGTGTCA 280176 | || ||| || || | | | || ||| | || | || || | || Sbjct 20809 GCCGTCGATCAACAACATCTCCGTG-ACGTGCGCTCTGTCGAGC---CGTATCGCCGTAC 20864 Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236 | |||||||| ||||| |||||||| || || ||||| | ||||| || ||| || Sbjct 20865 TGGGACCCAACGGTGCCGGTAAGTCGACGCTGATCAAGATGCTGACAGGTGAGGTGGAGC 20924 Query 280237 CCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | || || |||| || |||||||| || |||||| | || ||||| ||||||||| Sbjct 20925 CGAC-CAGCGGTCAGGTGTGGAAGCACCCTTCCATGCGTTTCGCCTACGTGGCTCAGCAC 20983 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 |||||||||||||| ||| ||||| ||| |||| | ||||| ||||| |||||||| Sbjct 20984 GCTTTCCACCACATTGAGTCGCACCTTGACGAGACTGCCAACCAGTACATCCAGTGGCG 21042 >seq5234 Length=8456 Score = 143 bits (158), Expect = 5e-29 Identities = 551/853 (65%), Gaps = 22/853 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| |||||||| | ||||| ||||||| ||||| || Sbjct 5774 TCGAAGAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATCCAGTCGAAAGGGTTCTTG 5715 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TAC-GAAGATGCGGTCTGCCACAAACTCCA 251680 || | ||| ||||| ||||| | ||| | ||| ||||| || || ||||| | Sbjct 5714 GCGTGGTAGATCTTGGACACACCAAGCGAGTACAGCAGA--CGGTCAGCAACGAACTCAA 5657 Query 251681 GATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAG 251739 ||||| | ||| || | |||||||||||||||| | || || | | |||| Sbjct 5656 TGTACTGGCACATGAGGCCCGAGTTCATGCCAATCAGCTCCACC-GGCAGCGAGTCACGC 5598 Query 251740 ATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGAC 251799 | ||| || | || | | || || || | || | | ||| | | | | Sbjct 5597 ACGAACTCGTGCTCAATCACCACCGCGTCACGAATGATCTCGTGCACGCGGCTCTCCGGC 5538 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859 ||||| | ||||||| ||||||||||| | | || | ||||| ||||||||| Sbjct 5537 AGCTTAGTGACCAGCTTGGAGTACAGGAGGCAGGCGAAGTCCGTGTGCATACCCTCGTCA 5478 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 |||||||||| |||||| || | | || |||||||| | ||||| ||| | |||||| Sbjct 5477 CGACTGATGAGCTCGTTCGAGAAGCTGAGTCCAGGCATGAGGCCACGCTTCTTAAGCCAG 5418 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGG 251979 ||||| | ||| ||||| || ||||| | | ||||| || | | || | || Sbjct 5417 AAGATGGAGCAGAAGGAACCCGAGAAGAAGATGCCCTCAACGGCAGCAAAAGCCAGTAGA 5358 Query 251980 CGCTCAGCAAACGACTTGTCCTGCGA-----CAAGAACTTCTGTGCCCATGCTGCCTTCT 252034 ||||| | | || | | ||| | |||| | ||||| ||| |||| Sbjct 5357 CGCTCCGGGTAGGA--GGACACACGAGGGTCGCACCACTTGAGCGCCCAGTGTGCTTTCT 5300 Query 252035 TTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCG--TC 252092 | || || || || || || ||| || ||| | | |||| |||| || Sbjct 5299 TCGTGACGCACGGAATGGTCTCAATCGCACGCAACAGATGATCCTTCTCG--ATCGCATC 5242 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACAT 252152 || |||| || |||| || || ||||| | |||||| |||||| ||| || || Sbjct 5241 CTTGATGTACGTGTCAATGAGCAGTGAGTAGACCTCCGAGTGGATGTTCTCGATGGCGAT 5182 Query 252153 CTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGC 252212 |||| | | ||||| || || ||| | ||||| | ||||| | || Sbjct 5181 CTGGAATCCGTAGAAGCATCGAGCCTCAGGCACCTGCACTTCATTACTGAAGTTCATGGC 5122 Query 252213 AATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAA 252272 | |||||| |||| || || |||||| |||| |||||| | || | | ||||||||| Sbjct 5121 CAAGTTCTCGTTCACGATTCCGTCGCTGGCTGCGAAGAAGGCGAGCACGTGCTTGATGAA 5062 Query 252273 GTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAAC 252332 ||| ||||| | ||| | |||||| ||| || | ||| || ||| | Sbjct 5061 GTGGCGCTCGTTGTCCGTAAGCTTG---GTCCAATCCTTGAGGTCGTGCACCAGGTCGAT 5005 Query 252333 TTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAGGGT 252391 || || | |||||||| | || | | |||||||||||||| ||| |||| || | | Sbjct 5004 CTCCTCAGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGC-CACACTTCGTGCT 4946 Query 252392 ACTTGATTGGGAA 252404 || ||| ||||| Sbjct 4945 CCTGGATAGGGAA 4933 >seq4521 Length=6430 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 6230 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 6289 Query 142563 CCCCAC 142568 |||||| Sbjct 6290 CCCCAC 6295 >seq1792 Length=1024 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 106 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 165 Query 142563 CCCCAC 142568 |||||| Sbjct 166 CCCCAC 171 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 684 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 743 Query 142563 CCCCAC 142568 |||||| Sbjct 744 CCCCAC 749 >seq15494 Length=1106 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 34 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 93 Query 142565 CCAC 142568 |||| Sbjct 94 CCAC 97 >seq15271 Length=1700 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 121 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 62 Query 142565 CCAC 142568 |||| Sbjct 61 CCAC 58 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 1648 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 1589 Query 142565 CCAC 142568 |||| Sbjct 1588 CCAC 1585 >seq9443 Length=2835 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 165 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 106 Query 142565 CCAC 142568 |||| Sbjct 105 CCAC 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027631795701847