Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq7195 131 1e-25 seq5421 109 5e-19 >seq7195 Length=47515 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || ||| | || | ||||| || || || |||||||| ||| Sbjct 44586 ATGCCACCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCG 44527 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| || ||| || || || || ||||||||| |||| |||||||| ||||| || Sbjct 44526 CTCAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGC 44467 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| |||||||| || | | || | | ||| | | || Sbjct 44466 GGGATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCC 44407 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||||| ||| | ||| ||||| |||| ||| || || ||||||||||| Sbjct 44406 ACGTCCAGGGTAATCGTCTTGCCCGTCAAAGTCTTGACGAAAATCTGCAT 44357 >seq5421 Length=2020 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || | || | |||||| || || || ||||||||||| Sbjct 916 ATGCCACCACGCAGACGCAGTACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAATCA 857 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| || || ||| ||||| || || |||||| | || || ||||| ||||| || Sbjct 856 CTCAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGC 797 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| |||||| || || | | || | | ||| | | || Sbjct 796 GGGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCC 737 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| | || | ||| ||||| || || || || || ||||||||||| Sbjct 736 ACGTCGAGCGTGATCGTCTTGCCCGTTAGCGTCTTCACGAAAATCTGCAT 687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420054690920004