Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq12351 152 5e-32 >seq12351 Length=7116 Score = 152 bits (168), Expect = 5e-32 Identities = 461/700 (66%), Gaps = 23/700 (3%) Strand=Plus/Minus Query 20134 CGGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTG-T 20192 ||| || ||||| || || ||||| |||||| | | ||||| || | || |||| | | Sbjct 5305 CGGGAACGGACGCGGTGTACGCGTGAGCTGCTTCTGAAGTGGTTCCACGTG-GTTTAGAT 5247 Query 20193 AGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAG 20252 | | ||| || || || | ||| || ||||| || ||| | || ||||| || || | Sbjct 5246 ACACGTGCGCGTCACCGATAACGTGGATGAACTCGCCAGGTTTCAGTCCAGTCACTTGCG 5187 Query 20253 CAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGT 20312 ||| | || | || | |||||||| ||||| || || || || | ||||||| Sbjct 5186 CAACAAGCCGCGTCAGCAGCGCGTAGCTGGCGATGTTGAATGGCACGCCAAGTCCCATGT 5127 Query 20313 CTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATA 20372 | |||| | ||| |||| ||| || || | || ||||| || || || || || || | Sbjct 5126 CGGCCGAACGCTGGTACATCTGGCACGATAATTCCCCGTCGGCCACGTAGAACTGGCAGA 5067 Query 20373 ACAAGTGACAGGGCGGAAGCGCCATCAACGACAAG-TCCGCCGGGTTCCACGCACACATA 20431 ||| ||| || || || || |||||| || || || |||||||||||||| ||| Sbjct 5066 ACATGTGGCAAGGTGGCAGTGCCATCT-CGTTGAGATCAGCCGGGTTCCACGCCGACAGG 5008 Query 20432 ATGATTCTTCTATCGTGCGGATTATT----TTTTATTAAATCCACAATGTACGACAATTG 20487 | || | || || |||||| | | | |||| | | || | ||| Sbjct 5007 ACAATCCGTCGGTCAGTCGGATTCGTACGCAGCTTGTGAATC----ACCTCCGCAAGTTG 4952 Query 20488 GTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCT 20547 ||| | ||| ||||| || ||||| |||| | |||| |||| || |||||||| | Sbjct 4951 GTCCACCCCTTGGCCAGTGTAGTCCGCATGCATGTCCGTGTACTTGGCACCAAAGTGACG 4892 Query 20548 CCACTGGAAACCGTAAACAGGTCCCAAATCCCC--CTCCCTTCTGTGCGCCAGGCCGCGC 20605 ||||||||| |||||||| ||||| | ||||| || || | | || ||| || || Sbjct 4891 CCACTGGAAGCCGTAAACCGGTCCAAGGTCCCCAACTTCC--CGATTCGGCAGTCCTCGA 4834 Query 20606 CCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCT--TGAAA 20663 | ||| | |||| | || ||||| |||||| || | || || |||| || || Sbjct 4833 CTATCCAAGTACTCGCGCGATCCATTGCCGTCCCAGATGTGGATATCT-TTCTGCTGCAA 4775 Query 20664 GCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCC 20723 | ||| | || || || | | ||||| || ||||| | | || ||||||| Sbjct 4774 CGTGTCTGCACTC-GTGTCGCCACTGATGAACCACAGTAGCTCCTCGGCCACACCTCGCC 4716 Query 20724 AAAACACCCGCTTTGTGGTTAGTAAGGGAAAG---TGGTCCCGCAGACTATACCTGGCCT 20780 | || |||| ||| || || || | |||||| | || | ||| ||| || | || Sbjct 4715 AGAAGACCCTCTTGGTCGTCAGCAGTGGAAAGACATTGTTTCTCAGGCTAAACGTCATCT 4656 Query 20781 GCATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTC 20820 || ||||| | || || || || | ||||||||||| Sbjct 4655 GCGCTCCAAACACCGACAGCGTACCCGTTCCGGTGCGGTC 4616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441286914370280