Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq7887 89.7 4e-13 seq5421 84.2 2e-11 >seq7887 Length=10481 Score = 89.7 bits (98), Expect = 4e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| |||||||| || || || || ||||||||| |||||||| || | Sbjct 1226 ACCACCACGCAGACGCAGCACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 1167 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || | || || |||| || | ||||||||||| || ||||| |||||||| || || Sbjct 1166 CAGAGTGCGGC-CGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCG 1108 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | | || ||| |||||| ||||| ||||| Sbjct 1107 GGATGCCCTCCTTGTCCTGGATTTTCTGCTT 1077 >seq5421 Length=2020 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||| ||||| || ||||| ||||||||| ||||||||||| | Sbjct 913 CCACCACGCAGACGCAGTACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAATCACTC 854 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | || | || || | |||||||| || || |||||||||||||| || ||| Sbjct 853 AGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 794 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || || |||||| ||| || ||||| Sbjct 793 ATGCCTTCCTTGTCCTGAATCTTCTGCTT 765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396987068204734