Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7195 131 4e-25 seq5421 131 4e-25 seq9710 125 2e-23 seq7887 116 9e-21 >seq7195 Length=47515 Score = 131 bits (144), Expect = 4e-25 Identities = 171/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || |||| || || || ||||| || |||| Sbjct 44587 CATG-CCACCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGT 44529 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || |||||||| ||||| || | || || || ||||||||||||||||| || | Sbjct 44528 CGCTCAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAG 44469 Query 288362 CTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| ||||| || |||||||| ||| |||| |||||| || || || || | Sbjct 44468 GCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTT-CACGTTGTCGATCGAGTCCGAAGGC 44410 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || |||||||| || |||| |||||||||||| |||||||| Sbjct 44409 TCCACGTCCAGGGTAATCGTCTTGCCCGTCAAAGTCTTGACGAAAATCTGCAT 44357 Score = 123 bits (136), Expect = 6e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| |||||||| ||||| || | || || || |||||| Sbjct 44775 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAG 44716 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTT 288401 ||||||||||| || | ||||| ||||| || |||||||| ||| |||| |||||| Sbjct 44715 ATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTT-CACGTT 44657 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || || || | || || || || || |||||||| || |||| |||||||| Sbjct 44656 GTCGATCGAGTCCGAAGGCTCCACGTCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTGAC 44597 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 44596 GAAGATCTGCAT 44585 >seq5421 Length=2020 Score = 131 bits (144), Expect = 4e-25 Identities = 173/239 (72%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 288235 ATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATA 288294 ||||||| | ||| ||||| || | || || || || | |||| || || ||||| Sbjct 1380 ATTCATAGTT-TCCGCCGCGAAGACGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATG 1322 Query 288295 TTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGT 288354 || |||||| |||||||| || || || | || || || |||||||| || ||||| Sbjct 1321 TTGTAGTCGCTCAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGC 1262 Query 288355 TGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG 288414 || | ||||| ||||| || ||||| || ||| |||||||| || || || || Sbjct 1261 TGGTCAGGCGGGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCC 1202 Query 288415 CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||||||||||||||| || ||||| ||||| || || |||||||| Sbjct 1201 GACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 1143 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || || | |||| || || ||||| || |||| Sbjct 1145 CATG-CCACCACGCAGACGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGT 1087 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || |||||||| || || || | || || || |||||||| || ||||| || | Sbjct 1086 CGCTCAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAG 1027 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| || ||||| || ||| |||||||| || || || || || | Sbjct 1026 GCGGGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCT 967 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||||||||||||||| || || || ||||| ||||| |||||||| Sbjct 966 CCACGTCGAGCGTGATCGTCTTGCCCGTTAGCGTCTTCACGAAGATCTGCAT 915 Score = 113 bits (124), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||||| || || | ||| || || ||||| || || | Sbjct 917 CATG-CCACCACGCAGACGCAGTACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAAT 859 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || ||||| || || || | || || || ||||| ||||| ||||| || | Sbjct 858 CACTCAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAG 799 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| || ||||| || ||| |||||||| || || || || || | Sbjct 798 GCGGGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCT 739 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||||||||||||||| || || || ||||| ||||| |||||||| Sbjct 738 CCACGTCGAGCGTGATCGTCTTGCCCGTTAGCGTCTTCACGAAAATCTGCAT 687 >seq9710 Length=10376 Score = 125 bits (138), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| || ||||| | ||||||||| ||||| || | || || || ||||||||| Sbjct 866 TTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATC 925 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 |||||||| || | |||||||| || || |||||||||||| || || || || Sbjct 926 AGACGCTGCTGGTCAGGCGGGATTCCYTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 985 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || ||| || || || || |||||||| ||||| || |||| ||||| || || Sbjct 986 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAG 1045 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 1046 ATCTGCATGAT 1056 >seq7887 Length=10481 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| ||||| || | || || || |||||| Sbjct 1189 TCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 1130 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | ||||| || || || |||||||||||| || || || Sbjct 1129 ATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTG 1070 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || || || ||||||||||| ||||| || || || ||||||||| Sbjct 1069 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACG 1010 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 1009 AAAATCTGCATT 998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179419115349426