Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq7786 158 3e-33 seq5234 98.7 2e-15 >seq7786 Length=29839 Score = 158 bits (174), Expect = 3e-33 Identities = 675/1056 (64%), Gaps = 51/1056 (5%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| || || |||||||| ||||||| ||||| |||||||||| ||| |||||| Sbjct 21067 CTCCTTRTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCGTCAAG 21008 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 21007 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 20948 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || ||| |||| | |||| | || || |||| ||| || || || Sbjct 20947 CTTCCACACCTGACCGCTGGTCGGCTCCACCTCACCTGTCAGCATCTTGATCAGCGTCGA 20888 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTG-------GAGTTCAGCGATACCT 333546 || || ||||| || || | || | || | | ||| || || || Sbjct 20887 CTTACCGGCACCGTTGGGTCCCAGTACGGCGATACGGCTCGACAGAGCGCA-CGTCAC-- 20831 Query 333547 GGGCATTCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGC 333606 || || ||||| | | || |||||||| |||| | | | ||| Sbjct 20830 GGAGAT----GTTGTTGATCGACGGCTTGGGGGTACCCGGGTACTGGTA-CGAACAGTTT 20776 Query 333607 GT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGG 333665 || || ||||||| |||| |||| | | ||||| || ||||| ||| Sbjct 20775 GTCAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCGGCAAGGAAACCAGGCTCCGGG 20716 Query 333666 AACTTCCACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGC 333722 || | || | | ||| || |||| || ||||||| | | ||||| | Sbjct 20715 AATATGAACTTGACGTTCTCCGACTCG---AGCTCGTAGTAGGCCTTGGCCTCGGGCTTC 20659 Query 333723 TTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAA 333782 | || ||| |||| |||||| || |||||||| |||| ||||| || | ||||| Sbjct 20658 TGCTCCACAAACTTGGACAGGTTACCCTTGTAGATCTTGAGCTTACGG---GTCTCGTAG 20602 Query 333783 TGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCAC 333842 || || || ||| || |||| ||||||||| || |||||||| ||||| || | | | Sbjct 20601 TGAATGATGTTGGTACAGACAGTGTCGAGGAAGCCAGAGTCGTGCGACACCATGATGGAA 20542 Query 333843 GAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGA 333902 | |||| | | ||| | ||||||| | ||||||| ||||| ||| | Sbjct 20541 GTCACGTTCGTCAGGCTCGTCAGGTAGTTCTCCAGCCACGCAACGTTCTTGACATCCAAG 20482 Query 333903 TGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 333962 ||||| || ||||| |||||||| || | | || ||| | ||||| ||||| || || Sbjct 20481 TGGTTCGTGGGCTCATCAAGAAGCAGAATGTCGGCCTTCTGCAGCATGGCACGGGCCAGC 20422 Query 333963 GCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAATA 334022 | |||||||| ||||| || || ||||||||| | || ||| || || Sbjct 20421 TCCAGTTTCATCTTCCAACCACCCGAAAGAGTGCCCA------CACCCTGGGCCTGCATC 20368 Query 334023 TC------AAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTT 334076 || |||||||| | || || ||| || | || | | |||| Sbjct 20367 TCGGGGGTGAAGCCAACGCCGGCAAGGGTGTCCTCGACCTCCTTGCGGGGC---GTGTT- 20312 Query 334077 TCCTTTACTTGTTCATCATTGGC---AATGAAGTCAATGATAGCCATGTTAGAATCGGAC 334133 ||| | | || |||| | | ||||||||| | | | || | || || || Sbjct 20311 --CTTCA---GGTCCTCATCGACAAGAATGAAGTCCACCACGGACAGCTCAGCCTCCGAA 20257 Query 334134 CCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAG-AGGGGAACCCTTC 334192 | | || | ||| || ||| | |||| || | | | ||| | |||||| || || Sbjct 20256 GCCTGCAGGTTGTGCTCAACGAACACAGTCTTGAGCTCGT-CGCGGCTGGGGAAGCCCTC 20198 Query 334193 AAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACA 334252 ||||| |||||| || ||||||||||| || || ||||| ||||| || || || Sbjct 20197 GAGCTGGCCGTTCGAGATGGCGCGCATCAGCGTCGACTTACCACAACCGTTGGGACCGCA 20138 Query 334253 CAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCC 334312 ||||||||| |||| |||||||| || | || | |||||||| ||||| | || Sbjct 20137 CAGACCGTAACGGTGGCCACGCTTGAGGCGAAGACGAGCGTTGTTCAGCAGAATCATACC 20078 Query 334313 ACCATATGCCAGAGAAAATTCACAATCACACAGATC 334348 ||| || || || || || ||||| | ||||| || Sbjct 20077 ACCGTAGGCAAGCGAGAACTCACAGTTGCACAGGTC 20042 >seq5234 Length=8456 Score = 98.7 bits (108), Expect = 2e-15 Identities = 123/166 (74%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| |||||||||||||| | |||||| | |||||||| || ||||| || ||||| | Sbjct 5619 GCTGATTGGCATGAACTCGGGCCTCATGTGCCAGTACATTGAGTTCGTTGCTGACCGTCT 5678 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGG 243679 | | ||||||| | || ||| | ||| || |||||||||| || | || |||| Sbjct 5679 GCTGTACTCGCTTGG-TGTGTCCAAGATCTACCACGCCAAGAACCCTTTCGACTGGATGG 5737 Query 243680 AGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | | || || || || || || || ||||||||||| |||||||| Sbjct 5738 ACATGATCTCTCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGT 5783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102660028171450