Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq7887 140 4e-28 seq5421 129 6e-25 seq9710 118 1e-21 seq7195 102 9e-17 >seq7887 Length=10481 Score = 140 bits (154), Expect = 4e-28 Identities = 165/221 (75%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||| | |||| || |||||| || || ||||| || | |||||| || | Sbjct 1214 ACGCAGCACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCC 1155 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| || || ||||||||||| | || | || |||||| Sbjct 1154 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 1095 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCGACCGTGA 42171 |||| |||||| || |||| | | | || | |||| || ||||| |||| ||||| Sbjct 1094 GTCCTGGATTTTCTGCTTGA-CATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGA 1036 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 |||| |||||||| || ||||| || || || ||||||||| Sbjct 1035 TGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTTC 995 >seq5421 Length=2020 Score = 129 bits (142), Expect = 6e-25 Identities = 165/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||| |||| || |||||| || || ||||||||| ||| || || | Sbjct 902 ACGCAGTACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAATCACTCAGTGTGCGGCC 843 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| || || ||||||||||| | || | || ||||| Sbjct 842 ATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTT 783 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| || || || || | ||| | | | || ||| || ||||| |||| ||||| Sbjct 782 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 724 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCACGC 42216 | || ||||||||||||||||| || || || ||||| ||| ||| Sbjct 723 TCGTCTTGCCCGTTAGCGTCTTCACGAAAATCTGCATCTTCTCGC 679 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||| |||| ||| |||||| || || ||||| || ||| || || | Sbjct 1130 ACGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 1071 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| || || ||||||||||| | || | || ||||| Sbjct 1070 ATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTT 1011 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| || || || || | ||| | | | || ||| || ||||| |||| ||||| Sbjct 1010 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 952 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||||||||||||||| || ||||| ||||| Sbjct 951 TCGTCTTGCCCGTTAGCGTCTTCACGAAGATCTGCAT 915 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||| |||| ||| |||||| || || ||||| || ||| || || | Sbjct 1358 ACGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 1299 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| || || ||||||||||| | || | || ||||| Sbjct 1298 ATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTT 1239 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| || || || || | ||| | | | || ||| || ||||| |||| ||||| Sbjct 1238 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 1180 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| |||||||| |||||||| ||||| Sbjct 1179 TCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 1143 >seq9710 Length=10376 Score = 118 bits (130), Expect = 1e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 ||||||| || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 864 CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 923 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | || | | ||||||||| |||||| || |||| | | | Sbjct 924 TCAGACGCTGCTGGTCAGGCGGGATTCCYTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 982 Query 42139 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 || | ||||| || ||||| || | ||||||||| |||||||| | ||||| ||| Sbjct 983 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 1042 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 1043 AAGATCTGCAT 1053 >seq7195 Length=47515 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||| || || |||| || ||||||||||||||||| Sbjct 44776 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAA 44717 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || ||||||||| ||| ||||| || | ||| Sbjct 44716 GATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTCA-CGT 44658 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||| | ||||| || | || || || |||||||| | ||||| | Sbjct 44657 TGTCGATCGAGTCCGAAGGCTCCACGTCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTGA 44598 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 44597 CGAAGATCTGCAT 44585 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||| || || |||| || ||||||||||||||||| Sbjct 44548 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAA 44489 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || ||||||||| ||| ||||| || | ||| Sbjct 44488 GATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTCA-CGT 44430 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||| | ||||| || | || || || |||||||| | ||||| | Sbjct 44429 TGTCGATCGAGTCCGAAGGCTCCACGTCCAGGGTAATCGTCTTGCCCGTCAAAGTCTTGA 44370 Query 42196 CAAAGATTTGCATTTT 42211 | || || ||||| || Sbjct 44369 CGAAAATCTGCATCTT 44354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543107097579280