Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq10576 322 5e-83 >seq10576 Length=3682 Score = 322 bits (356), Expect = 5e-83 Identities = 893/1354 (66%), Gaps = 49/1354 (4%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || ||||| || || |||||||| || || || || ||| ||||||| |||||||| Sbjct 2126 GCGACCCCTACTCTCTTCAACGCCGGCACGCCACGTCCTCAGCTGTCTTCTTGTTTCCTA 2067 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| ||||| ||| || || | ||||| |||||| | || ||| | Sbjct 2066 TTGGCAATGCAGGATGACTCGATCGAGGGCATCTACGACACGCTCAAGCAATGCGCGTGC 2007 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 || || || | ||||| || || || |||||| | ||| || | || |||| | Sbjct 2006 ATATCCAAGTGGGCGGGAGGTATTGGCATCAGTATGCACAACATCCGAGCCACCAACAGC 1947 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| || |||||| ||||||| ||| | |||| ||||| || || || ||| Sbjct 1946 TACATCCGCGGCACGAATGGCTCCTCCAATGGCATTATCCCCATGCTGCGTGTGTTTAAC 1887 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || |||| ||||| ||||||||||| || || | | | || || || || || ||||| Sbjct 1886 GACACGGCTCGCTATGTGGACCAGGGCGGAGGTAAGCGCAAAGGATCCTTTGCTATCTAT 1827 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | ||||| |||||||| |||||| | ||| | || ||||| ||||||||||||||| Sbjct 1826 TTGGAGCCATGGCACGCAGACGTGTTCGAGTTCCTGGATCTGCGCAAGAACCACGGCAAC 1767 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || ||| | | || | ||| | |||||||| ||||||||||| || || || ||||| Sbjct 1766 GAGCTGCACCGCGCTCGTGACTTGTTCTACGCGCTCTGGGTGCCTGATCTCTTCATGAAG 1707 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | || ||| || |||||||| || ||||| || ||| ||| || || | | Sbjct 1706 AGAGTGGAGGCCAATGGTAAGTGGAGTCTATTCTGTCCTAACGAAGCTCCTGGTCTCTAC 1647 Query 94372 GACGTTTGTGGA-TCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430 || || ||| || | ||||||| |||||| ||||| | | || || Sbjct 1646 GAGTGCTGGGGAGACGAG-TTTGAAGCGCTGTATGAAAAGTACGAGAAGGAAGGACGCGC 1588 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490 ||||| || | || | |||||||| ||| |||||| ||| | ||||| Sbjct 1587 TCGGAAGACCATTAACGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAGATCGAGAC 1528 Query 94491 GGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550 ||| ||||| || | | ||||||| | | |||| |||||| ||||||||| |||| Sbjct 1527 GGGAGTGCCCTTTATGCTCTACAAGGACGCAGCCAACCGCAAGTCGAACCAGCAGAACCT 1468 Query 94551 CGGGGTGATCAAGAGCTC---GAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 || |||| |||| || | ||| |||| | | ||||| || || || || Sbjct 1467 GGGCACGATC---CGCTCCAGCAACTTATGCTGCGAGGTGATGGAGTACACGTCGCCCGA 1411 Query 94608 CGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTA 94667 ||| | || ||||| ||| ||| || | ||| ||| |||||| || | Sbjct 1410 TGAGGTGGCAGTGTGCAACTTGGCGTCTGTGGCGCTGCCCAAGTTCGTGGACGAGG---- 1355 Query 94668 CACGTCTACTGCTTCGTTCGATCTGGAGGAGCT-TGTGAACTTCGCGGGAAGGATGGT-- 94724 ||| |||||| || | || | |||| | || | | || | Sbjct 1354 -GCGT----------GTTCGACTACCAGAAACTGTATGAA----GTGGTCAAGGTGATCA 1310 Query 94725 CTTG-AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 || | ||||| |||| ||| || ||| |||| ||| || || | ||||| ||| | Sbjct 1309 CTCGCAACCTCAACAAGGTCATTGACGTCAACTACTATCCTGTAGCAGAGGCTCGGAAGT 1250 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 | ||| || ||||| ||||| || || |||||||||||| | || || ||| | | Sbjct 1249 CCAACATGCGTCATCGCCCCATTGGTATTGGCGTCCAGGGTCTGGCTGATGCGTTCATCC 1190 Query 94844 TGATG-CGTCTGCCCTACGACTCTGTCGACGC-GGCGGGT---TTGAATTTGAACATATT 94898 | ||| | || | | ||| | | || || || | || |||||| || Sbjct 1189 TCATGAACTATG-CGTTCGA----GAGCAAGCAAGCTAGTGAGCTCAACAAGAACATCTT 1135 Query 94899 CGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGG 94958 ||| | || || |||| || ||| | ||| | | | |||| ||| || Sbjct 1134 CGAGACGATCTACTACGCCGCAATGGAGACGTCCATGGAGATCGCCA---AGGAATTGGG 1078 Query 94959 GCCACACGAATCGTTCCGCGGATCGCCCTTGGA-ACAGGGCATTTTTCAGTTCGACCTCT 95017 || |||| |||||| || || |||| | ||||| | || ||||||||| | | Sbjct 1077 TCCGTACGAGACGTTCCAGGGCTC-CCCTGCCAGTAAGGGCGTCTTCCAGTTCGACATGT 1019 Query 95018 GGGGTGTGAAGC---CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCA 95074 |||| || | | | || || || | |||||| || || | ||| || |||| Sbjct 1018 GGGGCGTCACACCTGCATCTGGACTCTGGAACTGGGCGGCACTCAAGGATGACGTAATCA 959 Query 95075 AACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGA 95134 || ||||| | ||| | ||||| || || || ||||| ||||| ||||| || |||| Sbjct 958 AATACGGTCTTCGCAACTCACTGCTGGTTGCACCGATGCCGACGGCGTCCACAGCTCAGA 899 Query 95135 TCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGC 95194 |||| |||||||| ||||| |||| || | ||| |||||| |||||||| | || |||| Sbjct 898 TCCTGGGCAACAATGAGTCCATCGAGCCTTACACGTCCAACATGTACAACCGCCGTGTGC 839 Query 95195 TCGCCGGGGAATTCCCCGTCATCAACAAGCACCT 95228 | ||||| || || | || |||||||| |||| Sbjct 838 TGGCCGGCGAGTTTACGATCGTCAACAAGTACCT 805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494626933049320