Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq7195 143 3e-29 seq5421 129 6e-25 seq7887 116 4e-21 seq10576 100 3e-16 seq5234 96.9 3e-15 seq9710 95.1 1e-14 >seq7195 Length=47515 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||| || | |||||||| || || || ||||| |||| | Sbjct 44583 CCACCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 44524 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 44523 AGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 44464 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| ||| || ||||| | ||||| ||| | ||||| | ||| || Sbjct 44463 ATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTGT-CGATCGAGTCCGAAGGCTCCAC 44405 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||| ||||| |||| ||| || || ||||||||||| Sbjct 44404 GTCCAGGGTAATCGTCTTGCCCGTCAAAGTCTTGACGAAAATCTGCAT 44357 >seq5421 Length=2020 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||| || | ||||||||| || || || |||||||| | | Sbjct 913 CCACCACGCAGACGCAGTACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAATCACTC 854 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || |||||| | |||| |||||||| || || || Sbjct 853 AGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 794 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| || |||||||| | ||||| ||| | ||||| ||| || Sbjct 793 ATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGT-CGATCGAGTCCGACGGCTCCAC 735 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||| || || || || || ||||||||||| Sbjct 734 GTCGAGCGTGATCGTCTTGCCCGTTAGCGTCTTCACGAAAATCTGCAT 687 >seq7887 Length=10481 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||| | || | || ||||| || || || ||||| || | Sbjct 1225 CCACCACGCAGACGCAGCACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 1166 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 1165 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 1106 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| |||||||||||||| | || | | |||||| ||| || Sbjct 1105 ATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACG 1046 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || ||||| || || || || || ||||||||||| Sbjct 1045 TCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 999 >seq10576 Length=3682 Score = 100 bits (110), Expect = 3e-16 Identities = 290/443 (65%), Gaps = 10/443 (2%) Strand=Plus/Plus Query 145758 GCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGA 145817 ||||| |||||||||||||||||||| |||| ||| | ||| ||||| ||| || Sbjct 507 GCGCATGTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATG---GA 563 Query 145818 CATGA-----CCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCA 145872 | ||| | || || || || || |||| | || ||||| || ||||| Sbjct 564 CGTGAGTTTGCTGA-TA-GTCGGGTCAGCGATGTGGATGTTCAGAGACTGACTCTGGCAG 621 Query 145873 ATGAAAGGAGCCCGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCG 145932 ||| ||| | ||||| || | || || | || | ||| ||| || ||||| | Sbjct 622 ATGTAAGCGCCACGGTCAGCCGACAGATCCAGCACGGCCTTCTGTTTGATCTCCCACACA 681 Query 145933 GTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTT 145992 ||||| | ||||||||||| | || || | | | ||||||||||| ||| Sbjct 682 GTTTTGTACTTGTCCTTGACGTGGTCTGGAATGGCCTTGACCTTCTGCACAGATCCACCG 741 Query 145993 TCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTG 146052 || | || | || || | |||||| || | || || || | || |||| Sbjct 742 TCATTTAGAATCTGATTACGTACTTCTGGTGTCCAGATTCCCAGCTCAATAAGCTCCTTC 801 Query 146053 ATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTG 146112 || || |||| |||||| | | |||||||||||| || || || | |||| |||| Sbjct 802 ATCAGGTACTTGTTGACGATCGTAAACTCGCCGGCCAGCACACGGCGGTTGTACATGTTG 861 Query 146113 CTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGC 146172 ||| | ||||||| ||||| ||||| || || ||||| || || | || || ||| Sbjct 862 GACGTGTAAGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCTGTGGACGCCGTCGGC 921 Query 146173 ATGTACGCCACCAGCAAAGAGTT 146195 || || ||||||| ||||| Sbjct 922 ATCGGTGCAACCAGCAGTGAGTT 944 >seq5234 Length=8456 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| ||| | ||| | ||||||| || || || || ||||| ||||| || Sbjct 5626 GGCATGAACTCGGGCCTCATGTGCCAGTACATTGAGTTCGTTGCTGACCGTCTGCT-GTA 5684 Query 47472 CA-GCTAAA-GTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 | ||| || ||| ||||| |||||| || |||| || ||||| | ||| ||| | Sbjct 5685 CTCGCTTGGTGTGTCC-AAGATCTACCACGCCAAGAACCCTTTCGACTGGATGGACATGA 5743 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | || ||| |||||||||||||||| ||||||||||| || ||||| || Sbjct 5744 TCTCTCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 5792 >seq9710 Length=10376 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 ||||| || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 866 TTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATC 925 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || || || ||||||||| |||||||||||||| | || Sbjct 926 AGACGCTGCTGGTCAGGCGGGATTCCYTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 985 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | ||| || || | || | || ||||| |||| || || ||||| Sbjct 986 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAG 1045 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 1046 ATCTGCATG 1054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475408273488080