Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq10576 86.0 6e-12 >seq10576 Length=3682 Score = 86.0 bits (94), Expect = 6e-12 Identities = 283/436 (65%), Gaps = 13/436 (3%) Strand=Plus/Minus Query 122916 CAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCGACC 122975 || || ||| | ||||||| || | ||| | ||| |||||||| | |||| | Sbjct 2225 CAGCAGATGATTCTGCGCGTGGCGCTGGGCATCCACAAGAGCGACATCCAGGCCGCGCTC 2166 Query 122976 GAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCC 123035 || || ||||| | ||||| ||||| || ||||||||||||| || ||| | ||| | Sbjct 2165 GAGACGTACGAGCTCATGTCGCAAAAGTTCTTCACGCACGCGACCCCTACTCTCTTCAAC 2106 Query 123036 GCCGGCACG--AAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACA 123093 ||||||||| | || |||||| ||||||| ||||| | | | ||| || ||| Sbjct 2105 GCCGGCACGCCACGT--CCTCAGCTGTCTTCTTGTTTCCTATTGGCAATGCAGGATGACT 2048 Query 123094 GCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCG 123153 ||| || ||||| || || | | ||||||| || ||||| | | || | Sbjct 2047 CGATCGAGGGCATCTACGACACGCTCAAGCAATGCGCGTGCATATCCAAGTGGGCGGGAG 1988 Query 123154 GCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACG 123213 | || ||| | | ||||| || | ||| | | ||| |||| | |||| | | Sbjct 1987 GTATTGGCATCAGTATGCACAACATCCGAGCCACCAACAGCTACATCCGCGGCACGAATG 1928 Query 123214 GAATCGCCTCC---GGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACG 123270 | | ||||| || | |||||||||| || | || || | | || | | Sbjct 1927 G---CTCCTCCAATGGCATTATCCCCATGCTGCGTGTGTTTAACGACACGGCTCGCTATG 1871 Query 123271 TCGACCAGGGC---GGCAAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACG 123327 | ||||||||| || || |||||||| | | || |||||| | || || ||||||| Sbjct 1870 TGGACCAGGGCGGAGGTAAGCGCAAAGGATCCTTTGCTATCTATTTGGAGCCATGGCACG 1811 Query 123328 TTGATGTGTACGATTT 123343 || |||| ||| || Sbjct 1810 CAGACGTGTTCGAGTT 1795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451915245827320